PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0196689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GATA | ||||||||
Protein Properties | Length: 215aa MW: 23278.7 Da PI: 7.0048 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 22.9 | 1.2e-07 | 194 | 215 | 1 | 20 |
GATA 1 CsnCgttk..TplWRrgpdgnk 20 C++Cgt++ Tp++Rrgp+g++ Lj0g3v0196689.1 194 CTHCGTSSksTPMMRRGPSGPR 215 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 7.1E-12 | 59 | 94 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 15.188 | 59 | 94 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.4E-13 | 63 | 93 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.481 | 126 | 168 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.3E-15 | 126 | 168 | IPR010402 | CCT domain |
Gene3D | G3DSA:3.30.50.10 | 1.4E-4 | 192 | 213 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MYSSMNIPDQ IEDNDGENHI HYDSHTLDDG GGGGGGVKDV STDNAYGSGG VGHELSIPPC 60 DDSSQLTLSF RGQVYVFDSV TPEKVQAVLL LLGGCELSSG SQGLEISPTN QRGSAEFPAK 120 CSLPQRAASL IRFRQKRKER CFDKKVRYGV RQEVALRMQR NKGQFTSAKK QDGTNSWGAD 180 QDSVQDLVQS ETSCTHCGTS SKSTPMMRRG PSGPR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5647 | 0.0 | cell culture| floral bud| flower| pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0196689.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501661.1 | 1e-115 | GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 6e-65 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A1S2Y9V7 | 1e-113 | A0A1S2Y9V7_CICAR; GATA transcription factor 25-like | ||||
STRING | XP_004501661.1 | 1e-114 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 2e-58 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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