PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0190909.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 329aa MW: 35039.1 Da PI: 10.4025

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0190909.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.8	3.8e-38	95	188	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s +++++s+ Lj0g3v0190909.1 95 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSsV--SVSLRGASNNSSlsspsld 186 79*************************************************************9999977732..2222222222222233333 PP TCP 89 .k 89 k Lj0g3v0190909.1 187 hK 188 30 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	100	154	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.6E-34	100	288	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MCPPPVSTSS CRSIIRPLFP LSPSIQSLPH STLNSSSSSS SSSSSSSIQI PRNSHCNKPY 60 SHFSLHLLTM SSSDGTTNGS MIDPQRTNQQ QQLSVKKPPS KDRHSKVDGR GRRIRMPIIC 120 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSSVSVS LRGASNNSSL 180 SSPSLDHKPL LAPTPTPFIL GKRIRTDDDS SPAAKDDSVG HSLVGSAAPA GLWALPARPD 240 FGQIWSFAAA AAAAPEMVVQ PAVSVSASQQ QQASFFIHHQ QQQQHQQHQQ AMGEASAARV 300 GNYLPGHLNL LASLSGGHGN SGRRDDDHR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.16196	1e-153	pod

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0190909.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	3e-74	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	3e-74	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	3e-74	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	3e-74	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014514723.1	1e-121	transcription factor TCP7
Swissprot	Q9FMX2	8e-98	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S3V8Q2	1e-120	A0A1S3V8Q2_VIGRR; transcription factor TCP7
STRING	XP_007142764.1	1e-121	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-73	TCP family protein