PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0188229.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

MYB

Protein Properties

Length: 559aa MW: 60538.4 Da PI: 4.5843

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0188229.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	8.1e-09	37	79	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT eE e++++ ++ +G++ +++Ia+ + +t +c+++++k Lj0g3v0188229.1 37 NPWTSEEREIFLEKFAAFGKD-FRKIASFLD-YKTTADCVEFYYK 79 58***************99.*****.9********98 PP
2	Myb_DNA-binding	22.8	2.1e-07	255	294	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l++av +G++ ++ Ia+++g +++l qck ++ Lj0g3v0188229.1 255 WTDGEKAGLLQAVSSFGKD-FAMIAQCVG-TKSLDQCKVFFC 294 ***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.07E-14	22	82	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.977	34	85	IPR017884	SANT domain
SMART	SM00717	5.1E-9	35	83	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-6	37	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-6	38	79	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.444	250	301	IPR017884	SANT domain
SMART	SM00717	8.3E-5	251	299	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.2E-9	252	301	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-5	253	296	IPR009057	Homeodomain-like
CDD	cd00167	1.95E-4	255	295	No hit	No description
Pfam	PF00249	1.7E-5	255	295	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MPALILDQKE KTISKFLSSN GLVEDPLAIE KERSIVNPWT SEEREIFLEK FAAFGKDFRK 60 IASFLDYKTT ADCVEFYYKN HKSDYFEKIK KKDGGKLKKL FRVKTDLLAS SKRCNREVNA 120 ASLEMLNAAS VMADGIARNR KLRSGRSLWR GHGDTKTSRG KESIKERPSS FDILQDERET 180 VAADVLAGIC GSLSSEAMSS GMTGSVHAVD VNNDRNGVNV TSLSEQQPLM PDVTQNIDDG 240 TFSGQSGGEL DSADWTDGEK AGLLQAVSSF GKDFAMIAQC VGTKSLDQCK VFFCKAQKTL 300 RMNPPISENI GSLVNADANS GRSDSDDACN EERGSVIGTD TSGIKAGEEL ASSVMNSYHE 360 SNPVEARNVT KGKSILDTDG DEDVLYSSDK SGSVRDERAM IVSDSIEIEK DKLNEMGGAV 420 TELVPASKIE PCHSNSVAED RLVSEVSSAC HGNELEGSLS CLYRDNLLEA DTDVGDELKN 480 KIYDSSTTLN ASVSPIEISC PRLISDAENQ PQHCLDEKPP FSGSSEDPST TVNSVLQDTA 540 GASLPCEKTA SQKLLSSIL

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MPALILDQKE KTISKFLSSN GLVEDPLAIE KERSIVNPWT SEEREIFLEK FAAFGKDFRK  60
IASFLDYKTT ADCVEFYYKN HKSDYFEKIK KKDGGKLKKL FRVKTDLLAS SKRCNREVNA  120
ASLEMLNAAS VMADGIARNR KLRSGRSLWR GHGDTKTSRG KESIKERPSS FDILQDERET  180
VAADVLAGIC GSLSSEAMSS GMTGSVHAVD VNNDRNGVNV TSLSEQQPLM PDVTQNIDDG  240
TFSGQSGGEL DSADWTDGEK AGLLQAVSSF GKDFAMIAQC VGTKSLDQCK VFFCKAQKTL  300
RMNPPISENI GSLVNADANS GRSDSDDACN EERGSVIGTD TSGIKAGEEL ASSVMNSYHE  360
SNPVEARNVT KGKSILDTDG DEDVLYSSDK SGSVRDERAM IVSDSIEIEK DKLNEMGGAV  420
TELVPASKIE PCHSNSVAED RLVSEVSSAC HGNELEGSLS CLYRDNLLEA DTDVGDELKN  480
KIYDSSTTLN ASVSPIEISC PRLISDAENQ PQHCLDEKPP FSGSSEDPST TVNSVLQDTA  540
GASLPCEKTA SQKLLSSIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-17	1	87	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-17	1	87	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0188229.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489929.1	0.0	uncharacterized protein LOC101505283 isoform X1
Refseq	XP_004489930.1	0.0	uncharacterized protein LOC101505283 isoform X1
Refseq	XP_004489931.1	0.0	uncharacterized protein LOC101505283 isoform X2
TrEMBL	A0A1S2XK90	0.0	A0A1S2XK90_CICAR; uncharacterized protein LOC101505283 isoform X2
TrEMBL	A0A1S2XL56	0.0	A0A1S2XL56_CICAR; uncharacterized protein LOC101505283 isoform X1
TrEMBL	A0A2Z6P6F7	0.0	A0A2Z6P6F7_TRISU; Uncharacterized protein
STRING	XP_004489929.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-60	MYB family protein