PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0181669.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 341aa    MW: 39119.5 Da    PI: 8.4513
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0181669.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16151071100
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+ t+ +  + g l++p++f++++gg+  ++  + l+ ++g +W++ +  +k++g +++++GWk+F+k   L+ g +v+F+++++s f   v
  Lj0g3v0181669.1  15 FFKIITTTSIEA-GELRIPNNFTKRYGGDMSNP--MFLKPPDGTEWQICH--SKTDGDVWFQNGWKDFAKYYSLDHGHMVLFEYKDSSHF--GV 101
                      778776655555.56***********9996665..***************..********************************988888..99 PP

                      EEE-SS CS
               B3  95 kvfrks 100
                      ++f+ks
  Lj0g3v0181669.1 102 HIFDKS 107
                      999985 PP
2B347.33.8e-15220306197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f +v++p++v   + l ++  fa+++ ++    +++ l+ ++gr+W+v +  + ++    + +GWk+F++ n+Lk+gD+++F+l+++   +l+v
  Lj0g3v0181669.1 220 FMTVMKPAYVDGYS-LHISSLFAKKYLKN---ATDVLLQVLDGRTWSVSF--NLGK----FNAGWKKFASVNNLKVGDVCLFELNKSVPHSLKV 303
                      78999999999998.***********644...357***************..7777....99**********************9887777888 PP

                      EEE CS
               B3  95 kvf 97 
                       +f
  Lj0g3v0181669.1 304 LIF 306
                      877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-2210107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-2213107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.42214107IPR003340B3 DNA binding domain
CDDcd100171.99E-1614105No hitNo description
PfamPF023625.1E-1515106IPR003340B3 DNA binding domain
SMARTSM010195.9E-1115107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17212306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-16213306IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-16218307No hitNo description
PROSITE profilePS5086310.828219309IPR003340B3 DNA binding domain
PfamPF023622.1E-12220306IPR003340B3 DNA binding domain
SMARTSM010193.4E-13220309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTTRNMPNNH SPILFFKIIT TTSIEAGELR IPNNFTKRYG GDMSNPMFLK PPDGTEWQIC  60
HSKTDGDVWF QNGWKDFAKY YSLDHGHMVL FEYKDSSHFG VHIFDKSTLE IRYPSHENQD  120
EEHNPDQIDD DSVEILDKIP PCKKTKLKSP MSCPKPRKKL RTSTSEDVGE RPELHNLPKQ  180
VKIEDDVSGN TECLEREDLT SKITEALNRA RTFQSKIPSF MTVMKPAYVD GYSLHISSLF  240
AKKYLKNATD VLLQVLDGRT WSVSFNLGKF NAGWKKFASV NNLKVGDVCL FELNKSVPHS  300
LKVLIFPLAE KLHSPSQSPV QGDRVNRINY GRFRYTEIQN V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1220631035144B3 domain-containing transcription factor VRN1
4i1k_B1e-1220631035144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160KPRKKLR
2155161PRKKLRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0181669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048960.0AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
GenBankAP0103090.0AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019459426.11e-104PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A072VGT11e-97A0A072VGT1_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGXP_004498232.11e-101(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-40B3 family protein