PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0179799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 265aa MW: 29163.5 Da PI: 6.1792 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.3 | 3.7e-29 | 79 | 137 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + +tY+ eHnh+ Lj0g3v0179799.1 79 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTKLMVTYSYEHNHS 137 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-30 | 71 | 139 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-25 | 74 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-35 | 78 | 138 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.548 | 79 | 139 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-25 | 80 | 136 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MYHRRFKINT RQLYASDSPN DLEPEPISEP GPASPSSGED IKTEAPSPKK RREMKKRVVT 60 LPIGDVDGSK SKGETYPPSD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR 120 VDPTKLMVTY SYEHNHSLPV PKSHSSAASA TATTSSDGAA DTPATPTEST AMLPPEEDLT 180 VFATHPAVLL GHHHHHADFG WFDDVASTGV LESPICDEVE DVMLTMREED ESLFADLGEL 240 PECSAVFRRR NILSTSTIQC DGITG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-18 | 56 | 139 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 8e-18 | 56 | 139 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.13096 | 1e-79 | cell culture| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0179799.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU375351 | 1e-121 | EU375351.1 Glycine max transcription factor (WRKY16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487582.1 | 1e-136 | probable WRKY transcription factor 69 | ||||
Swissprot | Q93WV5 | 3e-73 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | A0A371F7B3 | 1e-136 | A0A371F7B3_MUCPR; Putative WRKY transcription factor 69 | ||||
STRING | XP_004487582.1 | 1e-136 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 9e-69 | WRKY DNA-binding protein 69 |
Publications ? help Back to Top | |||
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