PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0177679.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 328aa    MW: 37240.9 Da    PI: 5.7043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0177679.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12128179155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + +  + a+i   A++++++L+
  Lj0g3v0177679.1 128 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YIQTGDQASIIGGAINFVRELE 179
                      79***************************9...9****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-13126183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-13126183No hitNo description
SuperFamilySSF474592.88E-15127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.767127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-8133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTFNKNITED QTQVMNRERN REMALEAVVY DPQAQDPFGY GFKDLYNCNF LADTTNWGYE  60
KLNLEKDDKQ IENYPYGDWS SSTTSSMLPH MNELQETTDP SNTSNFASAR PKRRRARSRK  120
NKEEIENQRM THIAVERNRR KQMNEYLSVL RSLMPESYIQ TGDQASIIGG AINFVRELEQ  180
RLQFLGAKKE SEGKSENEAA TASMPFSEFF SFPQYSTSAS GCDDSAAIGE HVGGVQSGIA  240
DIEVTMVESH ANLKIRSKKR PKQLLKMVTG LHTMRLTILH MNVTTTGEIV LYCLSVKVEE  300
DCKLGSVDDI AAAVYQMLDR IHQEAMLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128139RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.204844e-40root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0177679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061270.0AP006127.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT48O21, TM0211, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207714.11e-170transcription factor bHLH94
SwissprotQ9C7T47e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLC0JP340.0C0JP34_LOTJA; Putative basic helix-loop-helix protein BHLH26 (Fragment)
STRINGGLYMA20G37550.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]