PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0173119.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 155aa    MW: 17555.2 Da    PI: 7.3855
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0173119.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.45.8e-5526117293
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                      reqdr lPian+srimkk lPan+ki+kdak+t+qecvsefisf+tseas+kcq+ekrktingddllwa+atlGfedy+eplk+yl++yre+
  Lj0g3v0173119.1  26 REQDRSLPIANISRIMKKGLPANGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKLYLARYREV 117
                      89****************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-5122116IPR009072Histone-fold
SuperFamilySSF471136.06E-3928117IPR009072Histone-fold
PfamPF008084.4E-293195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-217896No hitNo description
PRINTSPR006151.7E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MADAPTSPVG GSHESGGEQS PRGSAREQDR SLPIANISRI MKKGLPANGK IAKDAKDTMQ  60
ECVSEFISFI TSEASEKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKLY LARYREVILF  120
WLIHRQYVDI CENLMRQLES PILDPHPRKM TLLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4624116193NF-YB
4awl_B3e-4624116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4624116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B3e-4626116292Transcription factor HapC (Eurofung)
4g92_B3e-4626116292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.207850.0cell culture| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0173119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182829e-79JQ918282.1 Medicago truncatula nuclear transcription factor Y subunit B9 (NF-YB9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366148.12e-74nuclear transcription factor Y subunit B-1-like
SwissprotQ9SLG04e-63NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A251NV354e-72A0A251NV35_PRUPE; Uncharacterized protein
TrEMBLA0A3N7FTH01e-71A0A3N7FTH0_POPTR; Uncharacterized protein
STRINGcassava4.1_017552m3e-72(Manihot esculenta)
STRINGXP_002523912.14e-72(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.63e-66nuclear factor Y, subunit B1