PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0165349.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 273aa    MW: 31625.4 Da    PI: 8.2777
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0165349.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.4e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G  +W+t+++  g+ R++k+c++rw +yl
  Lj0g3v0165349.1 14 RGPWTIEEDHKLMNFILNNGIQCWRTVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding52.31.3e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++++++++  lG++ W++Ia++++ gRt++++k++w++
  Lj0g3v0165349.1  67 RGDFTKMEEDQIIQLHSCLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.333961IPR017930Myb domain
SuperFamilySSF466895.24E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-51363IPR001005SANT/Myb domain
PfamPF002491.1E-111461IPR001005SANT/Myb domain
CDDcd001675.08E-41661No hitNo description
PROSITE profilePS5129424.92262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2565116IPR009057Homeodomain-like
SMARTSM007175.1E-1566114IPR001005SANT/Myb domain
PfamPF002497.9E-1567110IPR001005SANT/Myb domain
CDDcd001677.60E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRQPCCDKV GLRRGPWTIE EDHKLMNFIL NNGIQCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGDF TKMEEDQIIQ LHSCLGNRWS KIAAHFPGRT DNEIKNHWNT RIRKRLKLLG  120
VDSMTLNPVQ QKGKSDDNDD KNKTSQQSIT SQRYEEGVES KSMDIHGTEK MPKSEGRLEK  180
KNMDWNDGTS GFLNNYEMQC SSQWDLGSWT NQENKTSSSS YRSSSFSLDD ASNLSVGIKD  240
LFQQQWVDGL DSILSWDSFS TLERESILEN YRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0165349.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-41AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555012.11e-130myb-related protein 315
TrEMBLI1N6Y91e-128I1N6Y9_SOYBN; Uncharacterized protein
STRINGGLYMA19G07830.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-76myb domain protein 40