PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0162929.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 366aa    MW: 40249.4 Da    PI: 9.8929
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0162929.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31292349359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+Cts  gCp++k+ver+ +d +++++tYegeHnh+
  Lj0g3v0162929.1 292 DEYSWRKYGQKPIKGSPHPRGYYKCTSVrGCPARKHVERAVDDSNMLVVTYEGEHNHS 349
                      9*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.9E-15243288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-33278350IPR003657WRKY domain
PROSITE profilePS5081130.676285351IPR003657WRKY domain
SuperFamilySSF1182904.58E-27286350IPR003657WRKY domain
SMARTSM007741.8E-37290350IPR003657WRKY domain
PfamPF031067.6E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAIELITGYG GDSFEGRSSV RDSNAISVEE AASAGIHSVE KLMNMISEQK NHHQPQQEEQ  60
GNDNNGSELG TVVDMAVKRF REMISLLDKP RTGHARFRRA PPPTVQSVPL LQLQQTVEEN  120
SKPKTPFSSS LVKPEQGKTE QVSAFKAYCR TPLIRHPPPP LQNHHHHPLH QPLPPPEKNE  180
ARGSVNFSVS PSVSAANSYI STLTGESEGF QRPCRSSGFQ ITHVSLQGNS YMGKPPLSSN  240
SMKRKCNSME FPGIKCGSSS AQCHCSKKRK LKLKRVIRVA AISSKTADIP PDEYSWRKYG  300
QKPIKGSPHP RGYYKCTSVR GCPARKHVER AVDDSNMLVV TYEGEHNHSH TASEVAANVG  360
VPKSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21278349272WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.216290.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0162929.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028806877.11e-143probable WRKY transcription factor 7
SwissprotQ9STX02e-91WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A371FJB01e-137A0A371FJB0_MUCPR; Putative WRKY transcription factor 7 (Fragment)
STRINGevm.model.supercontig_21.1591e-118(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-86WRKY DNA-binding protein 7