PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0161019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 20560.8 Da PI: 10.3815 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66 | 3.9e-21 | 21 | 68 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i +k +rqvtfskR +g++KKA+EL++ C+++ +i+fs++g++y + Lj0g3v0161019.1 21 KIIEKVKRQVTFSKRCKGLFKKASELCTICGVDLVIIVFSPSGNVYSF 68 677899****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-27 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.436 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-25 | 13 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-17 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-22 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-17 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-17 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSPARTSRMK GKGRKKIEIK KIIEKVKRQV TFSKRCKGLF KKASELCTIC GVDLVIIVFS 60 PSGNVYSFGH PSVEAGLQRY LFQAPHPTSE TMVYILAQQN VTVRELHRRL SYVNNQLDSS 120 KKHGEELARR HKETHAQFLG ATQVEEMNMS QLEKFRATFY ELKNHVTSCG ADVVATNPQP 180 H |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0161019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027364754.1 | 2e-55 | agamous-like MADS-box protein AGL62 | ||||
STRING | AES62814 | 7e-50 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-31 | AGAMOUS-like 62 |