PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0161009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 19630.8 Da PI: 10.4181 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.4 | 1.4e-21 | 13 | 60 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i +k +rqvtfskR +g++KKA+EL++ C+++ +i+fs++gk+y + Lj0g3v0161009.1 13 KIIEKVKRQVTFSKRCKGLFKKASELCTICGVDLVIIVFSPSGKVYSF 60 677899****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-28 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.955 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-25 | 5 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-18 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-23 | 13 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-18 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-18 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MKGQGRKKIE IKKIIEKVKR QVTFSKRCKG LFKKASELCT ICGVDLVIIV FSPSGKVYSF 60 GHPSVEAGHQ RYLFQAPHPT SETMVYILAQ QNVTVRGLHR RLSHVNKQLD PNKKHGEELA 120 RRHKETHAQF LGATQVEEMN MSQLEKFRAT LYELKNHVTS CGADVVATNP QPH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0161009.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027364754.1 | 1e-53 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A371I0D4 | 1e-48 | A0A371I0D4_MUCPR; Agamous-like MADS-box protein AGL62 (Fragment) | ||||
STRING | AES62814 | 6e-48 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-29 | AGAMOUS-like 62 |