PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0160079.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 302aa    MW: 34395.2 Da    PI: 4.6035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0160079.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Lj0g3v0160079.1 14 KGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding55.11.8e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE++ +++  k+lG++ W+ Ia++++ gRt++++k++w++ 
  Lj0g3v0160079.1  67 RGNFTQEEEDCIIRMLKKLGTR-WSVIAAELP-GRTDNEVKNHWHTT 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.103961IPR017930Myb domain
SuperFamilySSF466891.8E-2811108IPR009057Homeodomain-like
SMARTSM007171.7E-91363IPR001005SANT/Myb domain
PfamPF002491.7E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-231568IPR009057Homeodomain-like
CDDcd001676.27E-91661No hitNo description
PROSITE profilePS5129426.36562116IPR017930Myb domain
SMARTSM007179.0E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2469116IPR009057Homeodomain-like
CDDcd001672.11E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MARTPSCDKS GMRKGTWTAE EDRKLIAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNIKRGNF TQEEEDCIIR MLKKLGTRWS VIAAELPGRT DNEVKNHWHT TLKRRVEKQT  120
SNTNEEAKII SNSKNAEPTT GRDLVTKNGI GSLQVTPPPA TSISDSIGAL SPFSSSSEFS  180
CTTSDQKLVF EDDDFDFLDA FTEHVNENFW SELQIDTNYA PQNQDTTEIL DACALSPNQS  240
LVLENEFGSL LDALTEPAID NFWGQPYVTD TCYVPESEYY STIYDADLWS QSTLYDEHYS  300
LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28141177109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.125352e-47root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0160079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097507e-47AP009750.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT47O18, TM1899, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348209.11e-137transcription factor MYB14-like
TrEMBLA0A445HNU61e-110A0A445HNU6_GLYSO; Transcription factor MYB14 isoform A
STRINGGLYMA06G45547.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.14e-56myb domain protein 13