PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0157999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 29501.7 Da PI: 9.487 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 68 | 121 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr+llP + + kK+s ++ +++Y+ +Lq Lj0g3v0157999.1 68 KKLNHNASERDRRKKINSLIASLRSLLPAgQ--DQMKKMSIPATISGVIKYLPELQ 121 6789*************************76..78888**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-14 | 65 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-15 | 66 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.627 | 67 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-11 | 68 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-10 | 68 | 125 | No hit | No description |
SMART | SM00353 | 2.3E-9 | 73 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLRFPSPVFS YSNMECLLDD EPFNHNQNNF NKERVSSSEY SFPNQPQPAV VLQAKVVEML 60 TAPSPDTKKL NHNASERDRR KKINSLIASL RSLLPAGQDQ MKKMSIPATI SGVIKYLPEL 120 QQQVKGLTKK KEKLLSRISQ QGDAVNEESR KRKKFINPHH NSADFIVSNS WLNDCEAAIH 180 IISSNYEEAH NHKTPLPEII LCLENNGYFL LNASSTETFG GRVFYILHFQ VEKTHRLESD 240 IITQKLLSIY EKKQRMF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 153 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0157999.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354033.1 | 2e-89 | bHLH transcription factor bHLH300 | ||||
Refseq | XP_028225228.1 | 2e-89 | transcription factor ORG3-like | ||||
TrEMBL | I3T1X1 | 1e-128 | I3T1X1_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA03G28630.1 | 7e-89 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 5e-41 | bHLH family protein |