PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0146729.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 429aa MW: 47259.2 Da PI: 7.3386 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.1 | 4.8e-30 | 175 | 234 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg Hnh+ Lj0g3v0146729.3 175 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGVHNHP 234 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-31 | 160 | 236 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-27 | 169 | 236 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.392 | 170 | 236 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 175 | 235 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 176 | 234 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MEDHHNFLDS NSDEEISSKE QKLEAAKGDI GEAREESEKL KFLLATNHNH EESELVTLSL 60 GISSQGKPTS KDEKKDSNRT QKRENEDVDI GLALGLDVRF DPAPETEAAI SNFSQESSST 120 NEKGKEEEPA EMWPPSKVLK TMRTGDKSTE ANPQHAHQLK KTRVSIRARC DSPTMNDGCQ 180 WRKYGQKIAK GNPCPRAYYR CTVSPTCPVR KQVQRCAEDM SILITTYEGV HNHPLPLSAT 240 AMASTTCAAA SMLQCPSSFS SHSQQGLESK YSDIAHIINS SCADAYCYST TPNALNFSTC 300 QISRPNNQFH FPNSSISILN SHPTITLDLA AASSSTSSHS GKFSQIPKYS STNLNFSSGF 360 SPLQYSIPQS PWSSYSSGNY FKSEGTLAQN RNQGGYLHMS SYALRYSQQG NSVLFPPPPP 420 SKNISSNRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 162 | 236 | 1 | 74 | WRKY transcription factor 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0146729.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014617466.1 | 1e-155 | probable WRKY transcription factor 61 | ||||
Refseq | XP_028230555.1 | 1e-155 | probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 3e-75 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A445LYN1 | 1e-154 | A0A445LYN1_GLYSO; Putative WRKY transcription factor 72 isoform A | ||||
TrEMBL | I1J5L7 | 1e-154 | I1J5L7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G05050.1 | 1e-155 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 1e-52 | WRKY DNA-binding protein 72 |
Publications ? help Back to Top | |||
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