PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj0g3v0146729.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 257aa MW: 28134.4 Da PI: 9.0744 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2.1e-30 | 3 | 62 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg Hnh+ Lj0g3v0146729.2 3 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGVHNHP 62 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 28.128 | 1 | 64 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-30 | 3 | 64 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-27 | 3 | 64 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 3 | 63 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-27 | 4 | 62 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MQMNDGCQWR KYGQKIAKGN PCPRAYYRCT VSPTCPVRKQ VQRCAEDMSI LITTYEGVHN 60 HPLPLSATAM ASTTCAAASM LQCPSSFSSH SQQGLESKYS DIAHIINSSC ADAYCYSTTP 120 NALNFSTCQI SRPNNQFHFP NSSISILNSH PTITLDLAAA SSSTSSHSGK FSQIPKYSST 180 NLNFSSGFSP LQYSIPQSPW SSYSSGNYFK SEGTLAQNRN QGGYLHMSSY ALRYSQQGNS 240 VLFPPPPPSK NISSNRR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-20 | 3 | 64 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-20 | 3 | 64 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj0g3v0146729.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014617466.1 | 9e-92 | probable WRKY transcription factor 61 | ||||
Refseq | XP_028230555.1 | 9e-92 | probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 1e-45 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A445LYN1 | 2e-90 | A0A445LYN1_GLYSO; Putative WRKY transcription factor 72 isoform A | ||||
TrEMBL | I1J5L7 | 2e-90 | I1J5L7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G05050.1 | 3e-91 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68150.1 | 3e-40 | WRKY DNA-binding protein 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|