PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0146729.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 430aa    MW: 47358.4 Da    PI: 7.3386
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0146729.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30176235159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg Hnh+
  Lj0g3v0146729.1 176 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGVHNHP 235
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-30163237IPR003657WRKY domain
PROSITE profilePS5081128.506171237IPR003657WRKY domain
SuperFamilySSF1182904.84E-27173237IPR003657WRKY domain
SMARTSM007741.4E-36176236IPR003657WRKY domain
PfamPF031061.7E-26177235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEDHHNFLDS NSDEEISSKE QKLEAAKGDI GEAREESEKL KFLLATNHNH EESELVTLSL  60
GISSQGKPTS KDEKKDSNRT QKRENEDVDI GLALGLDVRF DPAPETEAAI SNFSQESSST  120
NEKGKEEEPA EMWPPSKVLK TMRTGDKSTE ANPQHAHQLK KTRVSIRARC DSPTVMNDGC  180
QWRKYGQKIA KGNPCPRAYY RCTVSPTCPV RKQVQRCAED MSILITTYEG VHNHPLPLSA  240
TAMASTTCAA ASMLQCPSSF SSHSQQGLES KYSDIAHIIN SSCADAYCYS TTPNALNFST  300
CQISRPNNQF HFPNSSISIL NSHPTITLDL AAASSSTSSH SGKFSQIPKY SSTNLNFSSG  360
FSPLQYSIPQ SPWSSYSSGN YFKSEGTLAQ NRNQGGYLHM SSYALRYSQQ GNSVLFPPPP  420
PSKNISSNRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-201752371374WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0146729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617466.11e-154probable WRKY transcription factor 61
RefseqXP_028230555.11e-154probable WRKY transcription factor 61
TrEMBLA0A445LYN11e-152A0A445LYN1_GLYSO; Putative WRKY transcription factor 72 isoform A
TrEMBLI1J5L71e-152I1J5L7_SOYBN; Uncharacterized protein
STRINGGLYMA01G05050.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.16e-51WRKY DNA-binding protein 72