PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0141409.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 592aa    MW: 65657.4 Da    PI: 7.9721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0141409.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.6e-1674120148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Lj0g3v0141409.1  74 KGGWTAEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 120
                      688*****************************.************986 PP

2Myb_DNA-binding62.68.1e-20126172148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++d+v ++G+  W++Ia+ ++ gR +kqc++rw+++l
  Lj0g3v0141409.1 126 KGPWTQEEDDKIIDLVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 172
                      79******************************.*************97 PP

3Myb_DNA-binding52.79.8e-17178221146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++ +G++ W+ Iar ++ gRt++ +k++w++
  Lj0g3v0141409.1 178 KDAWTLEEELALMNAHQIWGNK-WADIARFLP-GRTDNAIKNHWNS 221
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.36369120IPR017930Myb domain
SMARTSM007172.1E-1473122IPR001005SANT/Myb domain
PfamPF002495.3E-1574120IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-1575130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2176128IPR009057Homeodomain-like
CDDcd001671.27E-1277120No hitNo description
PROSITE profilePS5129432.969121176IPR017930Myb domain
SuperFamilySSF466898.07E-32123219IPR009057Homeodomain-like
SMARTSM007172.2E-18125174IPR001005SANT/Myb domain
PfamPF002498.8E-19126172IPR001005SANT/Myb domain
CDDcd001673.30E-16128172No hitNo description
Gene3DG3DSA:1.10.10.604.0E-28129175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-22176227IPR009057Homeodomain-like
PROSITE profilePS5129421.4177227IPR017930Myb domain
SMARTSM007175.8E-15177225IPR001005SANT/Myb domain
PfamPF002491.7E-14178221IPR001005SANT/Myb domain
CDDcd001675.15E-11180223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSFTSIPATS LQPQDMAGVK SEECCLENKQ TTVASCSSVS EGSGSALRKS PGICSPASTS  60
TSHRRTTGPI RRAKGGWTAE EDETLRNAVA AFKGKSWKKI AEFFPDRSEV QCLHRWQKVL  120
NPELVKGPWT QEEDDKIIDL VSKYGPTKWS LIAKSLPGRI GKQCRERWHN HLNPDIKKDA  180
WTLEEELALM NAHQIWGNKW ADIARFLPGR TDNAIKNHWN SSLKKKLDFY LTTGRLPPIP  240
KNSSQVAAKD AIRHSATKTL HMQEQFASCS NKELNAAVET SSETTAISKI DDSSKYQFES  300
SGTIREVGDS SSVPANEPAD SDGIECKPGP SNMDHSYSHS EQVPTANFGI THEQKFENSG  360
LNGNSTSEHC LNNGKMSSSR LIRTPSSKES LTYGSLCYEP PQLDGSVPLD SLYLNIVCQQ  420
NEYCSNPMLS SPIGFFTPPR VKASELCTET PESILKKAAN TFPNTPSILR RRTRVQTHTT  480
PSKVLKVDSD SHTSNEPDKT KNNSGSEVET FSESPESHGN GSNIPNNKAF NASPPYRLRS  540
KRTAVVKSVE KQLEFVFDKE MNDENMNTME KPVKRSNVRT EDCLHETKLL VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67732275159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67732275159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0141409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602590.10.0transcription factor MYB3R-3
RefseqXP_028215488.10.0transcription factor MYB3R-3-like
TrEMBLA0A371HIH10.0A0A371HIH1_MUCPR; Transcription factor MYB3R-3 (Fragment)
STRINGGLYMA18G39740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-144myb domain protein 3r-5