PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0141409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 592aa MW: 65657.4 Da PI: 7.9721 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.6e-16 | 74 | 120 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Lj0g3v0141409.1 74 KGGWTAEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 120 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.6 | 8.1e-20 | 126 | 172 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++d+v ++G+ W++Ia+ ++ gR +kqc++rw+++l Lj0g3v0141409.1 126 KGPWTQEEDDKIIDLVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 172 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.7 | 9.8e-17 | 178 | 221 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Iar ++ gRt++ +k++w++ Lj0g3v0141409.1 178 KDAWTLEEELALMNAHQIWGNK-WADIARFLP-GRTDNAIKNHWNS 221 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.363 | 69 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 73 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 74 | 120 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-15 | 75 | 130 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 76 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-12 | 77 | 120 | No hit | No description |
PROSITE profile | PS51294 | 32.969 | 121 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-32 | 123 | 219 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-18 | 125 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-19 | 126 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.30E-16 | 128 | 172 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-28 | 129 | 175 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 176 | 227 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.4 | 177 | 227 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-15 | 177 | 225 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 178 | 221 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.15E-11 | 180 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MSFTSIPATS LQPQDMAGVK SEECCLENKQ TTVASCSSVS EGSGSALRKS PGICSPASTS 60 TSHRRTTGPI RRAKGGWTAE EDETLRNAVA AFKGKSWKKI AEFFPDRSEV QCLHRWQKVL 120 NPELVKGPWT QEEDDKIIDL VSKYGPTKWS LIAKSLPGRI GKQCRERWHN HLNPDIKKDA 180 WTLEEELALM NAHQIWGNKW ADIARFLPGR TDNAIKNHWN SSLKKKLDFY LTTGRLPPIP 240 KNSSQVAAKD AIRHSATKTL HMQEQFASCS NKELNAAVET SSETTAISKI DDSSKYQFES 300 SGTIREVGDS SSVPANEPAD SDGIECKPGP SNMDHSYSHS EQVPTANFGI THEQKFENSG 360 LNGNSTSEHC LNNGKMSSSR LIRTPSSKES LTYGSLCYEP PQLDGSVPLD SLYLNIVCQQ 420 NEYCSNPMLS SPIGFFTPPR VKASELCTET PESILKKAAN TFPNTPSILR RRTRVQTHTT 480 PSKVLKVDSD SHTSNEPDKT KNNSGSEVET FSESPESHGN GSNIPNNKAF NASPPYRLRS 540 KRTAVVKSVE KQLEFVFDKE MNDENMNTME KPVKRSNVRT EDCLHETKLL VT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-67 | 73 | 227 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-67 | 73 | 227 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0141409.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006602590.1 | 0.0 | transcription factor MYB3R-3 | ||||
Refseq | XP_028215488.1 | 0.0 | transcription factor MYB3R-3-like | ||||
TrEMBL | A0A371HIH1 | 0.0 | A0A371HIH1_MUCPR; Transcription factor MYB3R-3 (Fragment) | ||||
STRING | GLYMA18G39740.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6616 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-144 | myb domain protein 3r-5 |