PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0141269.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 671aa    MW: 73604.5 Da    PI: 7.72
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0141269.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-18106187199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k+lt+sd+++ g +++p+ +ae++               +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD+vvF   + +++el+v
  Lj0g3v0141269.1 106 FAKTLTQSDANNGGGFSVPRYCAEAI---------------HGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFL--RAENGELYV 182
                      77888889999888899888888444...............7899**************************************..449999*** PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  Lj0g3v0141269.1 183 GIRRA 187
                      ***97 PP
2Auxin_resp117.11.5e-38258341183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++FevvY+Prast+eF++k++ v++a++v+++ GmRfkm fetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+
  Lj0g3v0141269.1 258 AVTLAASNQPFEVVYYPRASTPEFCIKASAVKAAMRVQWCSGMRFKMPFETEDSSRISWfMGTIASVQVVDPVRWPNSPWRLLQ 341
                      678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-499130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-21102188IPR015300DNA-binding pseudobarrel domain
CDDcd100173.99E-17105186No hitNo description
PfamPF023625.7E-16106187IPR003340B3 DNA binding domain
SMARTSM010191.1E-14106188IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-19131189IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.307132188IPR003340B3 DNA binding domain
PfamPF065072.3E-33258341IPR010525Auxin response factor
PROSITE profilePS5174515.305560640IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MKEGEKSLDP QLWHACAGGM VQMPQVNSRV FYFPQGHAEH AHTNVDLRGS LPPFILCNVA  60
AVKFMADPET DEVFAKMRLV PLRNSELGLG EEGGEVLENS EKPASFAKTL TQSDANNGGG  120
FSVPRYCAEA IHGELWKFRH IYRGTPRRHL LTTGWSTFVN QKKLVAGDSV VFLRAENGEL  180
YVGIRRAKKG IGGGGGGGSE VSSGWSSASG SGNCGIGPYG AFSFFLREEN KTLRNGCVGG  240
GGDLSGRARV RPEAVIEAVT LAASNQPFEV VYYPRASTPE FCIKASAVKA AMRVQWCSGM  300
RFKMPFETED SSRISWFMGT IASVQVVDPV RWPNSPWRLL QVNWDEPDLL QNVKRVSPWL  360
VELVSNMPAI HFTPFSPPRK KLRFPQHPDF PLDVRFPTPT FSGNQLGPNV PLICLSDNAP  420
ASIQGARHAQ IGISLSDIHL SNKLQLGLFP TNIQLHSGIS NGNMTNHDES KESLSCLLTM  480
GKSIKSLEKS VDVKKHQFLL FGQPILTEQQ ISNSCSREVL SHNNSGKNSL AVNEDKEKCF  540
FDSPGKASSA EFSWQLGLDT GHCKVFLESE DVGRSLDLSC LGSYEELYMR LANLFGLERS  600
EMLNHVLYRD ATGAVKQTGE EPFSDFMKTA KRLTILTDSG SKSIRAWITG TRNGEHGLDA  660
SNQTGPLSIF A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-67836251388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.202612e-80pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0141269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027346655.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A371ELJ50.0A0A371ELJ5_MUCPR; Auxin response factor (Fragment)
STRINGGLYMA12G08110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]