PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0140659.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 431aa    MW: 47222.3 Da    PI: 7.9317
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0140659.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95.2e-42173249278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC  dls+akeyhr+h+vC+ hsk+p+v+++gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  Lj0g3v0140659.1 173 CQVEGCGLDLSSAKEYHRKHRVCDSHSKSPKVVIAGLERRFCQQCSRFHALSEFDDNKRSCRRRLSDHNARRRKPQP 249
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-33166234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.274170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.72E-39172252IPR004333Transcription factor, SBP-box
PfamPF031107.7E-32173246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDWNVKSLGQ WDWEHFFLNS KATENPTSQP TDWSSEADRE INVGVLYPSG SSGGYSGSEL  60
IHAATSSRSS KSPSNISSSN GDSKTSMLTL EGSPDDSIGK KELTKGEPVD TSTEAEPSSV  120
SGEPLLTLKL GKRLYFEDVC AGIDSKKSPA SGVTISSGKR CKSSNQNLQH TSCQVEGCGL  180
DLSSAKEYHR KHRVCDSHSK SPKVVIAGLE RRFCQQCSRF HALSEFDDNK RSCRRRLSDH  240
NARRRKPQPE AVQLNPSALS SSTYGINHKD GRKIMSPFAF SRTATNLAWQ DMHSSKLPQT  300
KDFLLKTAKA FNKTSSISPM LSADSSRLLT SKGIGTKIIV PGIEDSTTSS TQEVNRALSL  360
LSINSWGAYE TKSLSLEHSN QSIANAMTLP SSEYWPSDQL SYSDCDNSNR FQDFQLLSAP  420
FESGFPCNQL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271732461184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00161DAPTransfer from AT1G27360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0140659.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029129944.10.0squamosa promoter-binding-like protein 12 isoform X2
TrEMBLA0A0B2QW820.0A0A0B2QW82_GLYSO; Squamosa promoter-binding-like protein 12
TrEMBLK7MP800.0K7MP80_SOYBN; Uncharacterized protein
STRINGGLYMA18G00903.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-53squamosa promoter binding protein-like 2