PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0140319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TCP | ||||||||
Protein Properties | Length: 307aa MW: 33945.1 Da PI: 8.709 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.8 | 9.9e-35 | 20 | 129 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec..eaesssssa 82 +g+kdrhsk+hT++g+RdRRvRl a++a++f+ +qd+LG+d++sk+ +WL+++akp+i++l++ ++s +s+c + +++ Lj0g3v0140319.1 20 TGRKDRHSKVHTSKGPRDRRVRLAAHTAIEFYHVQDRLGYDRPSKAMDWLIKKAKPSIDKLVEAqsagssgmaigEQSESSSCynF--QLQKQL 111 79**************************************************************5555555555433333444321..222222 PP TCP 83 snsssg................k 89 g + Lj0g3v0140319.1 112 -----GdnpasstnnstqdfglS 129 .....111111122222233330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-31 | 20 | 121 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.812 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MKSTVGEINE VEGGHFVRST GRKDRHSKVH TSKGPRDRRV RLAAHTAIEF YHVQDRLGYD 60 RPSKAMDWLI KKAKPSIDKL VEAQSAGSSG MAIGEQSESS SCYNFQLQKQ LGDNPASSTN 120 NSTQDFGLSL NSFQHHPGLI PWQSQQGGEN HAASNEHQTF FAGSTDPVGF RNHYHQRILT 180 WNWNNEATSD HVNKVGFKVN SEQFLGQGSC SAYSRSGTTL QPSFSTSVRA WNDIPMASSD 240 HHHRSQTLHQ ASIFRSRFLP DEGVVRFGNI SDKIQGEEEN NGVAPNKPSS ASPSSHHSPQ 300 KAEHSNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0140319.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505518.1 | 1e-106 | transcription factor TCP4 | ||||
Refseq | XP_027929171.1 | 1e-106 | transcription factor TCP4-like isoform X1 | ||||
Refseq | XP_027929172.1 | 1e-106 | transcription factor TCP4-like isoform X1 | ||||
Refseq | XP_027929173.1 | 1e-106 | transcription factor TCP4-like isoform X1 | ||||
TrEMBL | A0A1S2YJM2 | 1e-104 | A0A1S2YJM2_CICAR; transcription factor TCP4 | ||||
TrEMBL | A0A4D6NCT2 | 1e-105 | A0A4D6NCT2_VIGUN; Transcription factor TCP subgroup | ||||
STRING | XP_004505518.1 | 1e-105 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-39 | TCP domain protein 10 |