PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0139469.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family DBB
Protein Properties Length: 178aa    MW: 19547.3 Da    PI: 6.9034
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0139469.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-07433534
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ +e+  ++ fC  ++  lC  C ++ H
  Lj0g3v0139469.1  4 LCDACESAAAIVFCAADEAALCSACDEKVH 33
                     7***************************99 PP
2zf-B_box30.29.5e-105286236
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg 36
                     + ++C+ +e+ ++ ++Ce++++ lC +C    H g
  Lj0g3v0139469.1 52 DVPRCDICENAPAFFYCETDGTSLCLQCDIIVHVG 86
                     6799*************************998855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.367147IPR000315B-box-type zinc finger
PfamPF006434.8E-6346IPR000315B-box-type zinc finger
CDDcd000211.72E-6347No hitNo description
SuperFamilySSF578457.63E-64886No hitNo description
PROSITE profilePS501199.1015196IPR000315B-box-type zinc finger
SMARTSM003366.7E-115196IPR000315B-box-type zinc finger
PfamPF006435.2E-85285IPR000315B-box-type zinc finger
CDDcd000212.68E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCSACDE KVHMCNKLAS RHVRVSLASP SDVPRCDICE  60
NAPAFFYCET DGTSLCLQCD IIVHVGGKRT HGRYLLFRQR IEFPGDKPGH AESPVSHPLN  120
PGGTKRGANP LPQMKLGEIQ QNHRMVPSSE ADAMRETKMI DLNMKPHKID EQTSNNQP
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0139469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964224.11e-106B-box zinc finger protein 18
RefseqXP_016201935.11e-106B-box zinc finger protein 18 isoform X2
RefseqXP_025653559.11e-106B-box zinc finger protein 18 isoform X2
RefseqXP_025698969.11e-106B-box zinc finger protein 18 isoform X2
SwissprotC0SVM52e-69BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A444Z9A51e-105A0A444Z9A5_ARAHY; Uncharacterized protein
STRINGGLYMA01G37370.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-72DBB family protein