PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0137349.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

CAMTA

Protein Properties

Length: 806aa MW: 90436.9 Da PI: 6.3376

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0137349.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.4	1.9e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +e ++rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDGy+wkkkkdgktv+E+he+LKvg+ e +++yYah++++p+f Lj0g3v0137349.1 30 EEaRTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDHPNFV 123 4559**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ Lj0g3v0137349.1 124 RRCYWLLDKSLEHIVLVHYRETQ 146 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.646	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.0E-74	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.6E-45	31	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	6.9E-5	340	455	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.55E-14	366	453	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.5E-4	367	452	IPR002909	IPT domain
SuperFamily	SSF48403	7.0E-18	550	664	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.4E-8	559	631	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.0E-17	559	664	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.84E-15	560	661	No hit	No description
PROSITE profile	PS50297	15.698	569	634	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.1E-5	602	631	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.007	602	634	IPR002110	Ankyrin repeat
SMART	SM00248	2200	641	672	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.547	766	795	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.041	789	806	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MANNLAGQLA GSEIHGFHTL QELDVGSIME EARTRWLRPN EIHAMLCNYK YFTINVKPVN 60 LPKSGTIVLF DRKMLRNFRK DGYNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDHP 120 NFVRRCYWLL DKSLEHIVLV HYRETQELHG SPVNSNSVTA SDPTAPLILS EEIDSGTTTA 180 YTGEVNDYIR VESHERKLHE LNTLEWDDLV VVSDPSTSAT TNGGKFPYFD RQNQILRNNS 240 FGNVASNPPA ENPTFNNLTQ PIAGSNSVPY NFSEGVNLQT VDNQVNPNEQ RNDPVSLGGV 300 DSLDPSVNDT LQSQDSFGMW VNHIMSDSPC SADGSALESS VSSIQEPYSS LVVDNQQHFL 360 PGQVFNITDV SPAGVSSAEK SKVLVTGFFL KEYLQLSKYN LLCVIGDVSV PAEIVQNGVY 420 RCWVSSHSPG FVNLFLSFDG HKPISQVVNF EYRTPVLHDP AASLEEKDSW DKFRLEMRLA 480 CLLFAKQQTL DIISCKVSPN RLEEAKEFAL KTAFISDSWQ YLIKSTEDNQ IPFSQAKDAL 540 FGIALKNRLK EWILEGIVSG SKTTEFDAQG QSVIHLCAIL GYNWAVSLFS WSGLSLDFRD 600 KFGWTALHWA AYCGREKMVA TLLSAGAKPN LVTDPTAQNP GGCTAADLAY MRGYDGLAAY 660 LSEKSLVEQF NDMSLAGNIR GSLETTMDDP VNYENLTEDQ LNLKDTLAAY RTAAEAASRI 720 QAAFREHSLK LRTEAIEFSS PEAEARDIVA AMKIQHAFRN FETRKMMAAA ARIQHTFRTW 780 KIRKEFLNMR RQAIKIQAAF RCFKAR

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MANNLAGQLA GSEIHGFHTL QELDVGSIME EARTRWLRPN EIHAMLCNYK YFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGYNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDHP  120
NFVRRCYWLL DKSLEHIVLV HYRETQELHG SPVNSNSVTA SDPTAPLILS EEIDSGTTTA  180
YTGEVNDYIR VESHERKLHE LNTLEWDDLV VVSDPSTSAT TNGGKFPYFD RQNQILRNNS  240
FGNVASNPPA ENPTFNNLTQ PIAGSNSVPY NFSEGVNLQT VDNQVNPNEQ RNDPVSLGGV  300
DSLDPSVNDT LQSQDSFGMW VNHIMSDSPC SADGSALESS VSSIQEPYSS LVVDNQQHFL  360
PGQVFNITDV SPAGVSSAEK SKVLVTGFFL KEYLQLSKYN LLCVIGDVSV PAEIVQNGVY  420
RCWVSSHSPG FVNLFLSFDG HKPISQVVNF EYRTPVLHDP AASLEEKDSW DKFRLEMRLA  480
CLLFAKQQTL DIISCKVSPN RLEEAKEFAL KTAFISDSWQ YLIKSTEDNQ IPFSQAKDAL  540
FGIALKNRLK EWILEGIVSG SKTTEFDAQG QSVIHLCAIL GYNWAVSLFS WSGLSLDFRD  600
KFGWTALHWA AYCGREKMVA TLLSAGAKPN LVTDPTAQNP GGCTAADLAY MRGYDGLAAY  660
LSEKSLVEQF NDMSLAGNIR GSLETTMDDP VNYENLTEDQ LNLKDTLAAY RTAAEAASRI  720
QAAFREHSLK LRTEAIEFSS PEAEARDIVA AMKIQHAFRN FETRKMMAAA ARIQHTFRTW  780
KIRKEFLNMR RQAIKIQAAF RCFKAR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.1777	0.0	pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0137349.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006584006.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	K7L3K8	0.0	K7L3K8_SOYBN; Uncharacterized protein
STRING	GLYMA07G37090.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]