PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0136299.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 349aa    MW: 40674.6 Da    PI: 9.3845
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0136299.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.92.5e-161297291
             FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                      Y++YA + GF +++++skk  ++g+i+ + f C +eg+  ++  +     +t+++ +++C ak+  + +kdg w++++++ +H H+l+p
  Lj0g3v0136299.1 12 HYRQYAMKKGFGMKVRNSKKG-TDGQIKYNMFACVREGNYVSSLPN---DLKTNPTRKIQCPAKICTSVHKDGLWYINTFNDDHCHDLSP 97
                     59*************998887.8999*************9998877...899***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-131297IPR004330FAR1 DNA binding domain
PfamPF105513.9E-38217311IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSFKSAECVK AHYRQYAMKK GFGMKVRNSK KGTDGQIKYN MFACVREGNY VSSLPNDLKT  60
NPTRKIQCPA KICTSVHKDG LWYINTFNDD HCHDLSPGKS RMFEGNRRIS MHVKRTIQIN  120
DDAGVRLNKS FRSLVQEAGG HENLPFVERD IRNFVRQERK RLGKDGDGKA LREYFSRMQQ  180
LNSNFFYEID LDDDFHVRNV FWADARSRAS YEYFGDVISF DTTYLTNKYD MPFAPFVGVN  240
HQGQSILLGC GLLSAEDTES FTWLFRSWLS CMYGKSPQGI VTDQCKAMKK AIQLVFPDAR  300
HRWCLWHIMK KIPEKFKSFL EYKSIKCDMK ECVYESLTER DSKMHGMLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0136299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642224.11e-164protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A396HW081e-154A0A396HW08_MEDTR; Putative transcription factor FAR family
STRINGGLYMA11G13523.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-72FAR1-related sequence 5