PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0136299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 349aa MW: 40674.6 Da PI: 9.3845 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.9 | 2.5e-16 | 12 | 97 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YA + GF +++++skk ++g+i+ + f C +eg+ ++ + +t+++ +++C ak+ + +kdg w++++++ +H H+l+p Lj0g3v0136299.1 12 HYRQYAMKKGFGMKVRNSKKG-TDGQIKYNMFACVREGNYVSSLPN---DLKTNPTRKIQCPAKICTSVHKDGLWYINTFNDDHCHDLSP 97 59*************998887.8999*************9998877...899***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-13 | 12 | 97 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.9E-38 | 217 | 311 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MSFKSAECVK AHYRQYAMKK GFGMKVRNSK KGTDGQIKYN MFACVREGNY VSSLPNDLKT 60 NPTRKIQCPA KICTSVHKDG LWYINTFNDD HCHDLSPGKS RMFEGNRRIS MHVKRTIQIN 120 DDAGVRLNKS FRSLVQEAGG HENLPFVERD IRNFVRQERK RLGKDGDGKA LREYFSRMQQ 180 LNSNFFYEID LDDDFHVRNV FWADARSRAS YEYFGDVISF DTTYLTNKYD MPFAPFVGVN 240 HQGQSILLGC GLLSAEDTES FTWLFRSWLS CMYGKSPQGI VTDQCKAMKK AIQLVFPDAR 300 HRWCLWHIMK KIPEKFKSFL EYKSIKCDMK ECVYESLTER DSKMHGMLL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0136299.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024642224.1 | 1e-164 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A396HW08 | 1e-154 | A0A396HW08_MEDTR; Putative transcription factor FAR family | ||||
STRING | GLYMA11G13523.1 | 1e-147 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-72 | FAR1-related sequence 5 |