PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0134509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 87aa MW: 9580.23 Da PI: 8.9996 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.8 | 4.9e-16 | 2 | 67 | 1 | 61 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l+++ pe+ r+ ++s + Lj0g3v0134509.1 2 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPGLFSII 67 6**********************************************************9988544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.41 | 1 | 87 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-12 | 2 | 66 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCSIR PCLQWIKSPE SQANATVFLA KFYGRAGLMN LVNSGPEHLR 60 PGLFSIIFSS PVSPTRIFYS CSCCTKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0134509.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009660 | 1e-146 | AP009660.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT23D08, TM0220, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077976.1 | 3e-39 | LOB domain-containing protein 40 | ||||
Refseq | XP_012568012.1 | 3e-39 | LOB domain-containing protein 41 | ||||
Refseq | XP_026386660.1 | 3e-39 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 1e-38 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A067KMA8 | 6e-38 | A0A067KMA8_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A0B2Q7W0 | 4e-38 | A0A0B2Q7W0_GLYSO; LOB domain-containing protein 41 | ||||
TrEMBL | A0A0B2QZ47 | 1e-38 | A0A0B2QZ47_GLYSO; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1S3DX07 | 6e-38 | A0A1S3DX07_CICAR; LOB domain-containing protein 41 | ||||
TrEMBL | A0A200Q3F6 | 5e-38 | A0A200Q3F6_9MAGN; Uncharacterized protein | ||||
STRING | XP_007139150.1 | 2e-38 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-41 | LOB domain-containing protein 41 |