PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0134389.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WOX
Protein Properties Length: 278aa    MW: 31669.2 Da    PI: 9.3529
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0134389.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.9e-1755115257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+++++eq+ +Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Lj0g3v0134389.2  55 RPRWNPKPEQICILEAIFNSgMVNPPRDEIRKIRMQLqeygQVGDANVFYWFQNRKSRSKH 115
                      89*****************99*************************************995 PP
2Wus_type_Homeobox111.83.6e-3654116264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +r+RW+P+peQi iLe++++sG+++P+++ei++i+++L+eyG+++d+NVfyWFQNrk+R+++k
    Lj0g3v0134389.2  54 PRPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 116
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1250119IPR009057Homeodomain-like
PROSITE profilePS5007110.0951116IPR001356Homeobox domain
SMARTSM003893.5E-853120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-754124IPR009057Homeodomain-like
CDDcd000863.48E-754116No hitNo description
PfamPF000464.8E-1555115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAASNKSWPS MFKSKRNPNH QWHHDINSSL LSTGFQRTPY ASGAGGGDER TPEPRPRWNP  60
KPEQICILEA IFNSGMVNPP RDEIRKIRMQ LQEYGQVGDA NVFYWFQNRK SRSKHKLRNQ  120
QNSKKNNNNQ EPQKINQTVP NSSSSSSSEK STPKEVTVTP SVGFYSNDID VVPNSPTPSV  180
NQTLFQTNFQ LPPVADPFSF AMNQEVVVHN VMETQGFHFT ELSNIIQPPP SQYEQNLGQW  240
LTTTNNIMSF ETTKKDQDNF MTMMHQPQHN FSLTPAPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0134389.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348338.12e-89WUSCHEL-related homeobox 9
TrEMBLA0A445I6A63e-86A0A445I6A6_GLYSO; WUSCHEL-related homeobox 8
TrEMBLI1M0483e-86I1M048_SOYBN; Uncharacterized protein
STRINGGLYMA13G24150.16e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-58homeobox-3