PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0134389.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WOX

Protein Properties

Length: 276aa MW: 31541.1 Da PI: 9.3529

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0134389.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.9e-17	53	113	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Lj0g3v0134389.1 53 RPRWNPKPEQICILEAIFNSgMVNPPRDEIRKIRMQLqeygQVGDANVFYWFQNRKSRSKH 113 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.8	3.6e-36	52	114	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+P+peQi iLe++++sG+++P+++ei++i+++L+eyG+++d+NVfyWFQNrk+R+++k Lj0g3v0134389.1 52 PRPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 114 689**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.75E-12	47	117	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.09	49	114	IPR001356	Homeobox domain
SMART	SM00389	3.5E-8	51	118	IPR001356	Homeobox domain
CDD	cd00086	4.12E-7	52	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-7	52	122	IPR009057	Homeodomain-like
Pfam	PF00046	4.8E-15	53	113	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MAASNKSWPS MFKSKRNPNH QWHHDINSSL LSTGFQRTPY ASGGGDERTP EPRPRWNPKP 60 EQICILEAIF NSGMVNPPRD EIRKIRMQLQ EYGQVGDANV FYWFQNRKSR SKHKLRNQQN 120 SKKNNNNQEP QKINQTVPNS SSSSSSEKST PKEVTVTPSV GFYSNDIDVV PNSPTPSVNQ 180 TLFQTNFQLP PVADPFSFAM NQEVVVHNVM ETQGFHFTEL SNIIQPPPSQ YEQNLGQWLT 240 TTNNIMSFET TKKDQDNFMT MMHQPQHNFS LTPAPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0134389.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541514.1	2e-89	WUSCHEL-related homeobox 9
Refseq	XP_027348338.1	1e-89	WUSCHEL-related homeobox 9
Refseq	XP_028186982.1	2e-89	WUSCHEL-related homeobox 9-like
TrEMBL	A0A445I6A6	4e-88	A0A445I6A6_GLYSO; WUSCHEL-related homeobox 8
TrEMBL	I1M048	4e-88	I1M048_SOYBN; Uncharacterized protein
STRING	GLYMA13G24150.1	7e-89	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-59	homeobox-3