PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0130909.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 639aa MW: 73104.6 Da PI: 6.6549

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0130909.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	358.5	1e-109	262	636	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+ lLl c +a+ ++d+++a+++L+++++++sp+gd+ qRla+yf+++L+arl + +++ ++ ++++ + +e l+a+++ +sP+ kf+ Lj0g3v0130909.1 262 LRALLLLCSQAIYTNDNRAANEFLKQIRDHSSPYGDASQRLAHYFANGLQARLGGDGTGAQIFYSSPSSKRITAAEFLKAYQAHLSCSPFKKFA 355 5789*************************************************666665555555555667***************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ aN++I++++++++++HiiDf+i +G+QWp L++ L++R++gpp+l+iTg++ p +g +e++ etg+rLa+++++++vpfe+n+++++++ Lj0g3v0130909.1 356 YFFANKMIMKEAAKAKTLHIIDFGILYGFQWPILIKFLSERDGGPPKLKITGIEFPLPGfrPTERIDETGRRLANYCKRFNVPFEYNAIASRNW 449 ****************************************************99999***********************9999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+L+++ +E +aVn++++ ++llde+ + + +r +vL+l+++++P++++ + ++ + n++ F++rf eal ++s+++d+ ++ ++r+++ Lj0g3v0130909.1 450 ETIRVEDLKTEANEFVAVNCMMRFENLLDETIEENCPRYAVLRLIRKINPNIFTQAISNGSFNAPFFVTRFREALFHFSSIYDMCDTVISRDNQ 543 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +r+++Ere++gre++nv+aceg er+er et+++W+ r ++aGFk++pl+e +++ ++ l++ + + + +e+++++++gWk+r L++ ++W Lj0g3v0130909.1 544 WRMMIEREFVGREAMNVIACEGLERVERPETYKRWQVRNTKAGFKQLPLNEILMTKFRTKLKEWYHKDFVFDEDNNWMLQGWKGRILYASTCW 636 *************************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.667	236	617	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-107	262	636	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MPMNSVMDPS LEDTDFSETG KFISQILMEE NVEQSPFYDS LSLQLTEKSF HDALINSSQN 60 ETTTSNNSSN TSRDLKPPSP DTPVSVLRDN HGFQFNSRAI YQPLHDLDSS ATSLLAQDIF 120 NDADSVSLFK RGLEEASKFL PVEPRIVTGL DSNGQPLNML GLKNRKHHDR EEESDSKEEG 180 MRSNKQSAFS VVDEDNNQDL SEMFDKVLLN LEHLPMCNEY KGLQNGGVKA EKEGEKEKPP 240 SSNGGGKGRP KKQGRSKETV DLRALLLLCS QAIYTNDNRA ANEFLKQIRD HSSPYGDASQ 300 RLAHYFANGL QARLGGDGTG AQIFYSSPSS KRITAAEFLK AYQAHLSCSP FKKFAYFFAN 360 KMIMKEAAKA KTLHIIDFGI LYGFQWPILI KFLSERDGGP PKLKITGIEF PLPGFRPTER 420 IDETGRRLAN YCKRFNVPFE YNAIASRNWE TIRVEDLKTE ANEFVAVNCM MRFENLLDET 480 IEENCPRYAV LRLIRKINPN IFTQAISNGS FNAPFFVTRF REALFHFSSI YDMCDTVISR 540 DNQWRMMIER EFVGREAMNV IACEGLERVE RPETYKRWQV RNTKAGFKQL PLNEILMTKF 600 RTKLKEWYHK DFVFDEDNNW MLQGWKGRIL YASTCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MPMNSVMDPS LEDTDFSETG KFISQILMEE NVEQSPFYDS LSLQLTEKSF HDALINSSQN  60
ETTTSNNSSN TSRDLKPPSP DTPVSVLRDN HGFQFNSRAI YQPLHDLDSS ATSLLAQDIF  120
NDADSVSLFK RGLEEASKFL PVEPRIVTGL DSNGQPLNML GLKNRKHHDR EEESDSKEEG  180
MRSNKQSAFS VVDEDNNQDL SEMFDKVLLN LEHLPMCNEY KGLQNGGVKA EKEGEKEKPP  240
SSNGGGKGRP KKQGRSKETV DLRALLLLCS QAIYTNDNRA ANEFLKQIRD HSSPYGDASQ  300
RLAHYFANGL QARLGGDGTG AQIFYSSPSS KRITAAEFLK AYQAHLSCSP FKKFAYFFAN  360
KMIMKEAAKA KTLHIIDFGI LYGFQWPILI KFLSERDGGP PKLKITGIEF PLPGFRPTER  420
IDETGRRLAN YCKRFNVPFE YNAIASRNWE TIRVEDLKTE ANEFVAVNCM MRFENLLDET  480
IEENCPRYAV LRLIRKINPN IFTQAISNGS FNAPFFVTRF REALFHFSSI YDMCDTVISR  540
DNQWRMMIER EFVGREAMNV IACEGLERVE RPETYKRWQV RNTKAGFKQL PLNEILMTKF  600
RTKLKEWYHK DFVFDEDNNW MLQGWKGRIL YASTCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-48	266	636	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.17754	0.0	cell culture

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0130909.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505853.1	0.0	scarecrow-like protein 34
Swissprot	P0C884	0.0	SCL34_ARATH; Scarecrow-like protein 34
TrEMBL	A0A1S2YJS7	0.0	A0A1S2YJS7_CICAR; scarecrow-like protein 34
STRING	XP_004505853.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	0.0	GRAS family protein