PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0128449.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TCP

Protein Properties

Length: 238aa MW: 27159.9 Da PI: 10.5306

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0128449.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	147.1	1.2e-45	33	173	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec....eaesssssas...nsssg 88 +kdrhskihT++g+RdRR+Rls+++ +rfF Lqd+LGfdk+s+t+eWLl+qak +i +l+g ss ++sec ++ +++++++ + + Lj0g3v0128449.1 33 RRKDRHSKIHTARGLRDRRMRLSLQVSKRFFGLQDMLGFDKPSETVEWLLNQAKSEINQLAGKgSSLTNSECegavSSLEEVVAVNgiqE---Q 123 69***********************************************************645555778765522233332223322...1 PP TCP 89 ....kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 + a ++ + k+++++a ++ lake r++ar+rarert+ekmr+k+ Lj0g3v0128449.1 124 gkepRPAVKSGRTIKRSRNSALHHPLAKECRERARERARERTKEKMRLKQ 173 3346888888899999999999***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-41	34	170	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.374	34	92	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.809	151	168	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MKKLPYSKGR KHIMGSSTEQ IQKNKSTCIL PRRRKDRHSK IHTARGLRDR RMRLSLQVSK 60 RFFGLQDMLG FDKPSETVEW LLNQAKSEIN QLAGKGSSLT NSECEGAVSS LEEVVAVNGI 120 QEQGKEPRPA VKSGRTIKRS RNSALHHPLA KECRERARER ARERTKEKMR LKQMGCWNPF 180 GTGELGSGSF QIPGVDTSFD LQLAEVKEHS SLSKENWRTV EAICYEQRVS IEDFQFSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	34	PRRRK
2	153	165	RERARERARERTK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the axillary bud of the first formed leaf node (PubMed:17655651). Expressed in axillary buds, shoot apical meristem, young leaves, vascular tissues and the tips of crown roots (PubMed:20547591). {ECO:0000269\|PubMed:17655651, ECO:0000269\|PubMed:20547591}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269\|PubMed:12581309, ECO:0000269\|PubMed:20547591, ECO:0000269\|PubMed:23463009}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0128449.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027333308.1	2e-54	transcription factor DICHOTOMA-like
Swissprot	Q8LN68	2e-30	TB1_ORYSJ; Transcription factor TB1
TrEMBL	A0A0L9TSH0	8e-50	A0A0L9TSH0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R753	8e-50	A0A0S3R753_PHAAN; Uncharacterized protein
STRING	GLYMA05G07943.1	5e-43	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6564	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	6e-24	TCP family protein

Publications ? help Back to Top
Lukens L,Doebley J Molecular evolution of the teosinte branched gene among maize and related grasses. Mol. Biol. Evol., 2001. 18(4): p. 627-38 [PMID:11264415] Takeda T, et al. The OsTB1 gene negatively regulates lateral branching in rice. Plant J., 2003. 33(3): p. 513-20 [PMID:12581309] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Arite T, et al. DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. Plant J., 2007. 51(6): p. 1019-29 [PMID:17655651] Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Minakuchi K, et al. FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice. Plant Cell Physiol., 2010. 51(7): p. 1127-35 [PMID:20547591] Mondragón-Palomino M,Trontin C High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots. Ann. Bot., 2011. 107(9): p. 1533-44 [PMID:21444336] Xia K, et al. OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice. PLoS ONE, 2012. 7(1): p. e30039 [PMID:22253868] Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Byeon Y,Back K An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield. J. Pineal Res., 2014. 56(4): p. 408-14 [PMID:24571270] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. [PMID:25381289] Chen Z,Gao X,Zhang J Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway. Plant Cell Rep., 2015. 34(5): p. 767-81 [PMID:25604991] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. 8(2): p. 303-14 [PMID:25616386] Jung H,Lee DK,Choi YD,Kim JK OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth. Plant Sci., 2015. 236: p. 304-12 [PMID:26025543] Li S The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development. Plant Signal Behav, 2015. 10(7): p. e1044192 [PMID:26039357] Yang X, et al. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae. Plant Physiol., 2015. 169(3): p. 2138-51 [PMID:26351309] De Paolo S,Gaudio L,Aceto S Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica. Sci Rep, 2015. 5: p. 16265 [PMID:26531864] Álvarez-Salgado E,Arredondo-Peter R Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth. F1000Res, 2015. 4: p. 1053 [PMID:26973784] Li X, et al. MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds. Sci Rep, 2016. 6: p. 32158 [PMID:27574184]