PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0126409.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17308.6 Da    PI: 4.8215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0126409.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF602.9e-192361145
                     HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     vtfskR+ g++KKA+ELS+LC++++a+i+fs+ g+
  Lj0g3v0126409.1  2 VTFSKRKSGLFKKAFELSILCGIQIAIILFSHGGN 36
                     9******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.7E-19140IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.502144IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-18257IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-11243IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-11621IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-112142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVTFSKRKSG LFKKAFELSI LCGIQIAIIL FSHGGNPFSF GNPSVDTVAN RLLYQNEDDQ  60
DDVGEPSQNN EVYQLNQQVE ELKNQFQVAK EKGDVLSNGV KNKDPLGKDH APNLEELQKM  120
KASLKELGGY MKVKINNMDL EAATTLLELA NQDMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0126409.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-22AGAMOUS-like 29