PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0122049.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YB | ||||||||
Protein Properties | Length: 194aa MW: 21934 Da PI: 4.3857 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 78.4 | 1e-24 | 11 | 94 | 3 | 86 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c re+r+ti+++ +l al+ lGf dy+e++ + Lj0g3v0122049.2 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCGREERRTIAPEHVLKALGVLGFGDYIEEVYAA 94 6899***************************************************************************98654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-38 | 9 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.91E-35 | 12 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-21 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEPMDIVAKA KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCGREERRTI APEHVLKALG VLGFGDYIEE VYAAYEQHKL ETMQDTLKGA KWSNRAEMTE 120 EEALAEQQRM FAEARARMNG GTITSKEPDA DQSDVLISVS NASVVSFLAT YQIVWICFSQ 180 FRIDFNFWVF GSFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-33 | 12 | 135 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7050 | 0.0 | cell culture| pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0122049.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141060 | 0.0 | BT141060.1 Lotus japonicus clone JCVI-FLLj-2C22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494002.1 | 1e-106 | protein Dr1 homolog | ||||
Refseq | XP_017422009.1 | 1e-106 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 8e-88 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | I3SKR2 | 1e-109 | I3SKR2_LOTJA; Uncharacterized protein | ||||
STRING | XP_007138352.1 | 1e-104 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 3e-90 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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