PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0121279.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CAMTA
Protein Properties Length: 129aa    MW: 15621.8 Da    PI: 9.0238
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0121279.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.17.8e-54131282116
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      ++e kkrwlk+ e++ iL n+++ e+t+ ++++ + gsl+L+nr+++r+frkDG++w+kk+dgktv E+he+LKvg+ve+l+cyYah+een+tf
  Lj0g3v0121279.1  13 YEEaKKRWLKPVEVLYILRNHNECEFTNVPPHQSTGGSLFLFNRRVLRFFRKDGHNWRKKRDGKTVGEAHERLKVGNVEILNCYYAHGEENRTF 106
                      56669***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhyle 116
                      qrr+yw+L+ e+e+ivlvhy++
  Lj0g3v0121279.1 107 QRRSYWMLDPEYEHIVLVHYRD 128
                      ********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.7429129IPR005559CG-1 DNA-binding domain
SMARTSM010764.5E-6412129IPR005559CG-1 DNA-binding domain
PfamPF038596.2E-4715128IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MPPGLEYNIS ELYEEAKKRW LKPVEVLYIL RNHNECEFTN VPPHQSTGGS LFLFNRRVLR  60
FFRKDGHNWR KKRDGKTVGE AHERLKVGNV EILNCYYAHG EENRTFQRRS YWMLDPEYEH  120
IVLVHYRDI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0121279.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-35AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552779.11e-80calmodulin-binding transcription activator 4
RefseqXP_028212348.11e-80calmodulin-binding transcription activator 4-like
SwissprotQ9FYG21e-61CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0B2QVH03e-79A0A0B2QVH0_GLYSO; Calmodulin-binding transcription activator 4
TrEMBLK7MP753e-79K7MP75_SOYBN; Uncharacterized protein
STRINGGLYMA18G00840.25e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142411819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.17e-53Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]