PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0115319.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 780aa    MW: 86719.1 Da    PI: 6.0835
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0115319.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.9e-085496347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I +++   +  +q++ +++ +
  Lj0g3v0115319.2 54 AWTRQEEESFFTALRQVGKN-FEKITSRVR-SKNKNQVRYYYYRL 96
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.76E-1146101IPR009057Homeodomain-like
PROSITE profilePS5129312.41850101IPR017884SANT domain
Gene3DG3DSA:1.10.10.609.1E-65099IPR009057Homeodomain-like
SMARTSM007179.1E-75199IPR001005SANT/Myb domain
PfamPF002495.9E-65496IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MEAEVQNMLN SNPQLVPETD VSAQNGDPGV SSSDANAIMP EMPAPKKPTR QWAAWTRQEE  60
ESFFTALRQV GKNFEKITSR VRSKNKNQVR YYYYRLVRRM NKLLGPGLSL DAKNSKDTNT  120
AMLRWWSLLE KYSCKASKLH LKPRRFKIFL EALEHQLLKD RKKNVRKRSL QGGSCLPPTP  180
STVSNQHRSL GNDDLADDLV LDDSQNNIKV GPSKPSLKRN VNMGVSRSNT KGDSNTMKPT  240
RQRKKSGMNT TAAYKKWEKA AIAGVSLVAD AAEHLERAAT VKEVEHDQEN PGEKCADPVE  300
HVLPLPTFPQ NHSVDNNMPN SMKLKLQLFP IDEPTRRALE MDKHNPYLEL TLSTRKKISS  360
ILEHLIRKWG SSSIAIGELM LFPYGIQKEN LVNYQRWTQE CTLTAADIHA MVGSPPIVRL  420
RYGWFSNTEL VALNMQVPVV SDCMPKQSKV GVDNTNDQVM KLTSRPTPST DNHSMELSED  480
CGTSLNRNCA LTTTSTDLPN ARDDSVYLNT SSEEPCEPTD NISWHGKDVG DGTVTRQLED  540
MDELKLSSGA GLSAGAWADS LTNISVGDLL SGVSQDCHDP PVAENCHSVQ QIPFTCDSFD  600
AAIAAHISRH QDKIGQPAMT SHMSSIWDAE ETCDAFSFRK VHSFHENGPC LSPVNLESEK  660
KDPGSYEKLD KLSPEKERLV DDQTDSTPMD SSESDADIQD HLAKEFSGIA DMYWPDSLGP  720
LDLDVPTTKY HSXGLNRLIA SSLDAFQNCS FFGVDKKEAP STVEVQETAT LSEFKIGSGT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.204511e-154root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0115319.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358913e-79AC235891.2 Glycine max clone GM_WBc0069F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027345175.10.0TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A371G7P80.0A0A371G7P8_MUCPR; TSL-kinase interacting protein 1
STRINGGLYMA16G23840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1