PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0114559.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 426aa    MW: 49483.1 Da    PI: 8.1902
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0114559.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-12693198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     ffkv   +d  k+   ++pk fa+++  g+    s  + l+ ++g +W++    +k+++ ++l+k+WkeF++   Lk g f+vF+++g+s f  +v
  Lj0g3v0114559.1  6 FFKVI--HDQEKKEETRIPKAFASKYwkGL----SNPIFLRLPNGDKWKIFW--EKRDDDIWLQKNWKEFAE--PLKYGYFLVFEYKGESHF--LV 89
                     78888..99999999***********7543....4459***********999..****************75..8************99999..99 PP

                     EEE- CS
               B3 95 kvfr 98
                     ++f+
  Lj0g3v0114559.1 90 SIFN 93
                     9985 PP
2B351.51.8e-16205300196
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+ + +++++l++++lvlp +f +++  g++  +  t+++      +Wev+++++ +++r  +++GWk F++ n+L++gD +v ++++r+  ++
  Lj0g3v0114559.1 205 FCVIILTPSYLQQNLLVLPSDFSRKYlyGLE--GIATIIIGKDLTSTWEVNFKFDYSKERARFGSGWKLFCEVNNLQVGDGCVYEMMKRNPVTF 296
                      66777889999999************87444..445888888899****************************************998766656 PP

                      EEEE CS
               B3  93 vvkv 96 
                      ++++
  Lj0g3v0114559.1 297 KIHI 300
                      6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.73E-17295IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-13493No hitNo description
Gene3DG3DSA:2.40.330.106.5E-16493IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.36495IPR003340B3 DNA binding domain
SMARTSM010196.8E-7695IPR003340B3 DNA binding domain
PfamPF023627.0E-10693IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-17199300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-17199301IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-15204300No hitNo description
SMARTSM010192.3E-6205304IPR003340B3 DNA binding domain
PfamPF023625.2E-14205300IPR003340B3 DNA binding domain
PROSITE profilePS5086313.747205304IPR003340B3 DNA binding domain
SMARTSM010190.78355424IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-7363423IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-6381424IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.26385424IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSLPRFFKVI HDQEKKEETR IPKAFASKYW KGLSNPIFLR LPNGDKWKIF WEKRDDDIWL  60
QKNWKEFAEP LKYGYFLVFE YKGESHFLVS IFNCNTLEIN YPSKRCALDT SEEDDDSVHI  120
VEESEISTQP RKKKKINSNG SEPESGPSDR TNNNGKRKIN VDFDATQQEI SGANRGSIVK  180
SKNSIKAQAI EEISRNFYSE TENPFCVIIL TPSYLQQNLL VLPSDFSRKY LYGLEGIATI  240
IIGKDLTSTW EVNFKFDYSK ERARFGSGWK LFCEVNNLQV GDGCVYEMMK RNPVTFKIHI  300
KPSSGQLQGE SHEANRYKPK RGVEENMECF GNSRSCSKKP VLENLGSPNM EPDKFEITVK  360
SYYPNVPREF VKRHSRCLYA NHTRICEGWG AFKRECKLNI DDICVFELVD EEKLEFKVSI  420
ISRSHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0114559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-35B3 family protein