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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj0g3v0109969.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
NAC |
| Protein Properties |
Length: 212aa MW: 24666.3 Da PI: 6.5054 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj0g3v0109969.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 37.7 | 6.3e-12 | 1 | 28 | 102 | 129 |
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
++ktLvfykgrap+g+k+dW+mheyrle
Lj0g3v0109969.1 1 MRKTLVFYKGRAPNGQKSDWIMHEYRLE 28
89************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 212 aa
Download sequence Send
to blast |
MRKTLVFYKG RAPNGQKSDW IMHEYRLETN ENGSTLHQEE GWVVCRVFKK RMTTSQKMGE 60
YESHCWYEDQ VSFMQDLESP RPIPHHPYAT YPNCKAELDQ LQYNMAQDHF LQLPQLESPK 120
VTQSPPTSLV HYVYASNGST LQLSSLTQEE IHVQNLHHQT LHSLDQVTDW RVLDKFVASQ 180
LSHDQDHGSK ETSYSQEHTS TSTSSGQINL WK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235865 | 1e-32 | AC235865.2 Glycine max clone GM_WBb0117N07, complete sequence. |
