PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0109039.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 286aa    MW: 32999.7 Da    PI: 10.5262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0109039.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000193116123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ Cg+ ++++ +Lk+H +  H
  Lj0g3v0109039.1  93 YVCTVCGRKCKTNLDLKKHFKQlH 116
                      9******************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.7E-71397IPR029060PIN domain-like
SMARTSM003550.004893116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94993121IPR007087Zinc finger, C2H2
PROSITE patternPS00028095116IPR007087Zinc finger, C2H2
CDDcd061672.37E-12105247No hitNo description
Gene3DG3DSA:3.40.50.10101.7E-7178246IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVRDNKTGSY AAKQNKVVVL WDLDNKPPRG PPYHAAVSLK TLAESFGDVV DISAYANRHA  60
FIHLPQWVLH ERRQRKTTDI LEKKGIVTPS DPYVCTVCGR KCKTNLDLKK HFKQLHQRER  120
QKKLNRMNSL KGKKRQRFKE RFIRGNHKYN EAARTLVTPK VGYGLASELR RAGVFVKTVE  180
DKPQAADWAL KRQMQHSMSR GIDWLFLVSD DSDFSEMLKR AREANLGTVV VGDADRALGQ  240
HADFWVPWIA VEKGEVSEMD LKNRERRRRR TTTEDSPDGL FFNEGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270RRRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.225620.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0109039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105200.0AP010520.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT30K21, TM1873b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028772573.11e-173uncharacterized protein LOC114729706
TrEMBLG7I9W51e-166G7I9W5_MEDTR; C2H2 type zinc finger protein
STRINGAES592261e-167(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-152C2H2-like zinc finger protein