PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0104919.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 218aa    MW: 24982.6 Da    PI: 9.9568
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0104919.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.44.9e-2217258128
              NAM  58 wyfFskrdkkyatgkrknratk.sgyWkatgkdkevlskkgelvglkktLvfykgra.pkgektdWvmheyrl 128
                      +yfF +r++ky++g+r+ ra++  g+Wka+gk++++ s +g+++g k+tLvfy+g+  ++++kt+W+m+e++l
  Lj0g3v0104919.2   1 MYFFNSRNRKYPNGHRPDRAVEgFGFWKASGKETPINS-NGNTIGFKRTLVFYRGKPnKDPVKTNWIMKEFTL 72 
                      5******************665389************9.999***********997515678*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.7761100IPR003441NAC domain
SuperFamilySSF1019411.02E-26299IPR003441NAC domain
PfamPF023651.1E-9272IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MYFFNSRNRK YPNGHRPDRA VEGFGFWKAS GKETPINSNG NTIGFKRTLV FYRGKPNKDP  60
VKTNWIMKEF TLNYKANVAS SGTALPTKLD DWVLCKIYKN KSNNMKSQDT EKVNEGLGEK  120
QSQHFEEMTT SHEVIPAQQM QIPSSYFPIL ENLTVNTKIK YLESRTILCY LNIFLFACLI  180
FRPTWPLDAC FRYTKAALVE INGSSLLSQI GRPSQIGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-26210674171NO APICAL MERISTEM PROTEIN
1ut4_B2e-26210674171NO APICAL MERISTEM PROTEIN
1ut7_A2e-26210674171NO APICAL MERISTEM PROTEIN
1ut7_B2e-26210674171NO APICAL MERISTEM PROTEIN
4dul_A2e-26210674171NAC domain-containing protein 19
4dul_B2e-26210674171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0104919.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045411e-90AP004541.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT04C07, TM0098e, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575346.12e-36NAC domain-containing protein 1-like
TrEMBLA0A1S3EK775e-35A0A1S3EK77_CICAR; NAC domain-containing protein 1-like
STRINGXP_004514442.12e-35(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.26e-28NAC family protein