PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0099719.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 237aa    MW: 26924.5 Da    PI: 9.4785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0099719.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-1379126455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er RR+++++ f +L  llP +   p  K +K++i e++v+YIk Lq
  Lj0g3v0099719.1  79 VHIMIERERRKKMRNMFGTLHALLPRL---P-SKADKSAIIEETVDYIKTLQ 126
                      599***********************6...3.8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.74575125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-1378130No hitNo description
Gene3DG3DSA:4.10.280.108.4E-1678138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-1578135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-1179126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-1181131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDLEGQGLNL GFFWENQPWG TLSNSDNIGE SKEKLDMKPQ NKKGEGNGED TLVYKKRRRG  60
NRTEKNVVAD GEGKVDHEVH IMIERERRKK MRNMFGTLHA LLPRLPSKAD KSAIIEETVD  120
YIKTLQQTLQ KLEKHKKERF QSSVEQPYDL REGFIPDLGS STSLSSIMVG SRTSSNTPIS  180
YNSNSLQPVG FETWSYQNIV LNVTGFEAQF CISTAKKKST LTTIAFVLEK YKIEVIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0099719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348315.11e-66transcription factor bHLH95
TrEMBLA0A394DCB41e-63A0A394DCB4_LUPAN; Uncharacterized protein
STRINGAES901314e-64(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-39bHLH family protein