PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0094629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 35034.1 Da PI: 7.3187 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d+++ +G g W+ +++ g++R++k+c++rw++yl Lj0g3v0094629.1 14 RGAWTAHEDKILTDYIRVHGEGKWRNLPKRAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.2e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Lj0g3v0094629.1 67 RGNISSDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111 78999*****************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.328 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.70E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.887 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.12E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MGRSPCCSQE GLNRGAWTAH EDKILTDYIR VHGEGKWRNL PKRAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI SSDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLGKRVKSLN 120 QTNTCSTNLA THSPSLSPSK PQSLLVRTKA TKCSKVLFRN SLPNSSQTMK MQNKSESEAE 180 PETDQRPLPV DSVARNSISK SNKMETSNGV LAFPRENQKE QSTDLLMDFN VGDFCLSDLL 240 NSDFDGMCNL ANNDNNNEPL SPCSDQPPLF SDEIFKDWTR CSFADDETNV SNNLHSFTSF 300 LESGEEILGE S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5506 | 0.0 | floral bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0094629.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458423.1 | 1e-142 | transcription factor MYB8 | ||||
Swissprot | Q9FJA2 | 7e-64 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A1W6EUB5 | 0.0 | A0A1W6EUB5_LOTCO; R2R3-MYB transcriptional factor MYB14 | ||||
STRING | GLYMA13G16890.1 | 1e-135 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-64 | MYB family protein |