PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0094349.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 236aa    MW: 26075.9 Da    PI: 6.6479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0094349.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004279101123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Lj0g3v0094349.2  79 FSCNYCRRKFFSSQALGGHQNAH 101
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.59E-677107No hitNo description
PROSITE profilePS5015711.30279106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMTPNLKLEA ENNLEGRSQV GSNNSATTSD ADPGSVSLDL TLNFSPSDEI EELKDTNDTN  60
SEAGAEDHAS SLPSIHRIFS CNYCRRKFFS SQALGGHQNA HKRERTMAKR AMRMGMFTER  120
YTSLASLPLH GSNFRSLGIE AHSAMHQRHM ASSSLRVPDM RGAARFEKDY CFGTPMFMQD  180
GDVGLFWPGS FRQIDARAGV NLGHEHEQHA HNSSPSFVET TPPAQTSTSP DLTLRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.81501e-127pod| root
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0094349.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360281.11e-114zinc finger protein 4-like
RefseqXP_027360282.11e-114zinc finger protein 4-like
RefseqXP_027360283.11e-114zinc finger protein 4-like
RefseqXP_027360284.11e-114zinc finger protein 4-like
RefseqXP_027360285.11e-114zinc finger protein 4-like
SwissprotQ392633e-37ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A0B2RG971e-106A0A0B2RG97_GLYSO; Zinc finger protein 4
TrEMBLA0A0R0E5631e-106A0A0R0E563_SOYBN; Uncharacterized protein
TrEMBLA0A445EZD71e-106A0A445EZD7_GLYSO; Zinc finger protein 4
STRINGGLYMA07G27820.11e-106(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-39zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]