PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0092269.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | AP2 | ||||||||
Protein Properties | Length: 507aa MW: 55883.4 Da PI: 6.8553 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 175 | 224 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Lj0g3v0092269.2 175 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 224 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.8 | 6.4e-14 | 267 | 317 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Lj0g3v0092269.2 267 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 317 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-16 | 175 | 233 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.9E-9 | 175 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 176 | 232 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-17 | 176 | 232 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 176 | 238 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-11 | 176 | 233 | No hit | No description |
CDD | cd00018 | 2.08E-25 | 267 | 327 | No hit | No description |
Pfam | PF00847 | 1.4E-9 | 267 | 317 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-17 | 267 | 327 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 268 | 325 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 268 | 325 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-31 | 268 | 331 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 269 | 280 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 307 | 327 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MWDLNDSPDQ RKHEESEGCS SLKTSTIDGG DDEKGKRVDG SVSNSSSSAV VIEDGSEEDE 60 PEEGEREGTK AAMMMMKKRN SSKIFGFSVT GEVEEESFLL DSENPPVTHQ FFPVGEHEKA 120 VVSGGGGGGG GGSSFPRAHW VGVKFCQSEA PGAGKSVEVS QPMKKSRRGP RSRSSQYRGV 180 TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FNIEDYEEDL 240 KQMTNLTKEE FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT 300 EIEAARAYDK AAIKCNGKEA VTNFDPSIYE NELNSESSGN APNEQQHNLD LSLGNSGSKP 360 GSSQVFGNHT TNSANHEQHL PSQSNWQNGG NKPKLMSILP KPLHRSNKEV HGESEALRML 420 SQTHLHSSAS NEMQRYVPYR SSGESPMFHN FAHIHPPNFH FPSSSYGGRV GSDLSLSSSD 480 HQHLQQWQSG PPHYLATAAA SSGFPPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 132 | SGGGGGGGGGS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.4897 | 0.0 | floral bud| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. | |||||
Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0092269.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027345548.1 | 0.0 | floral homeotic protein APETALA 2-like | ||||
Swissprot | P47927 | 1e-138 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | V7CCN3 | 0.0 | V7CCN3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155905.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-129 | AP2 family protein |