PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0092269.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family AP2
Protein Properties Length: 288aa    MW: 32019.4 Da    PI: 9.77
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0092269.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.8e-142575155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Lj0g3v0092269.1 25 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 75
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-172585IPR016177DNA-binding domain
CDDcd000182.28E-262585No hitNo description
PfamPF008476.0E-102575IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-172683IPR001471AP2/ERF domain
SMARTSM003804.2E-312689IPR001471AP2/ERF domain
PROSITE profilePS5103215.4612683IPR001471AP2/ERF domain
PRINTSPR003671.8E-62738IPR001471AP2/ERF domain
PRINTSPR003671.8E-66585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEI  60
EAARAYDKAA IKCNGKEAVT NFDPSIYENE LNSESSGNAP NEQQHNLDLS LGNSGSKPGS  120
SQVFGNHTTN SANHEQHLPS QSNWQNGGNK PKLMSILPKP LHRSNKEVHG ESEALRMLSQ  180
THLHSSASNE MQRYVPYRSS GESPMFHNFA HIHPPNFHFP SSSYGGRVGS DLSLSSSDHQ  240
HLQQWQSGPP HYLATAAASS GFPPQIIRPS SSQGWLQKNG FHTLKRPS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.48970.0floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0092269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237263.11e-168floral homeotic protein APETALA 2
TrEMBLA0A151RQV11e-163A0A151RQV1_CAJCA; Floral homeotic protein APETALA 2
TrEMBLV7CCN31e-163V7CCN3_PHAVU; Uncharacterized protein
STRINGXP_007155905.11e-164(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-72AP2 family protein