PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj0g3v0090079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 108aa MW: 12412.5 Da PI: 10.1112 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.2 | 7e-21 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i k +q+tfskRr ++KKA+EL++LCd+++a+++fs+ gkl+ + Lj0g3v0090079.1 20 KIVKKEYKQITFSKRRPVLFKKASELCILCDVQIAIVVFSPGGKLFCF 67 57778889*************************************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.558 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-23 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-25 | 12 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-17 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-21 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-17 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-17 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 108 aa Download sequence Send to blast |
MDMLNQEKKT TGHKNIEIKK IVKKEYKQIT FSKRRPVLFK KASELCILCD VQIAIVVFSP 60 GGKLFCFGHP NPKTVITRYL NGTTSEDSEP GKPRPMPSTY EGYNKRYE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-16 | 12 | 106 | 1 | 90 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj0g3v0090079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027367484.1 | 1e-42 | agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q9FKK2 | 5e-23 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A371E6Z0 | 2e-38 | A0A371E6Z0_MUCPR; Agamous-like MADS-box protein AGL61 (Fragment) | ||||
STRING | AES84416 | 3e-34 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-21 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
---|---|---|---|
|