PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj0g3v0089699.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 33785.5 Da PI: 7.0747 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.2e-09 | 8 | 56 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46 W eE++ + +a++++ ++ +W+tIa+ ++ +++ +++k ++q Lj0g3v0089699.1 8 WNYEEEKAFENAIAMHWNDdeaaseeQWETIASAVP-NKSMEEVKQHYQA 56 999*********************************.***********95 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2.1e-12 | 136 | 180 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Lj0g3v0089699.1 136 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 180 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.1E-5 | 4 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.9E-9 | 6 | 62 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-4 | 7 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.62 | 8 | 58 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.65E-6 | 8 | 58 | No hit | No description |
Pfam | PF00249 | 2.4E-7 | 8 | 56 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.097 | 129 | 185 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.8E-17 | 130 | 186 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-17 | 132 | 183 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.3E-10 | 133 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-11 | 134 | 179 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-11 | 136 | 180 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-9 | 136 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MSSSGTIWNY EEEKAFENAI AMHWNDDEAA SEEQWETIAS AVPNKSMEEV KQHYQALVDD 60 VSAIEGGLVP FPNYVVEETT SSNKDFHGSH KSNSSDKRSS CNFGSGFSGL GHDSATHSGK 120 GSLSRSSEQE RKKGIPWTEE EHRLFLLGLD KFGKGDWRSI SRNFVISRTP TQVASHAQKY 180 FIRLNSMNRD RRRSSIHDIT SVNNGDVASN QAPITGQHGS PIPPRTMGVG VGHSLEHRVQ 240 PHHIPGGLGM YGTPVGHPVV AAPPGHMASA VGTPVMLPPG HHHPHPHPHP HPPYVVPLAY 300 PMAPPTMHQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-13 | 4 | 83 | 7 | 79 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.25851 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00191 | DAP | Transfer from AT1G49010 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj0g3v0089699.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT146253 | 0.0 | BT146253.1 Lotus japonicus clone JCVI-FLLj-17M3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507110.1 | 0.0 | transcription factor MYBS1 | ||||
Swissprot | Q9FNN6 | 2e-79 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | I3T0K5 | 0.0 | I3T0K5_LOTJA; Uncharacterized protein | ||||
STRING | XP_007155139.1 | 1e-172 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10694 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49010.1 | 6e-68 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|