PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0087929.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LSD
Protein Properties Length: 87aa    MW: 9211.86 Da    PI: 8.301
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0087929.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1443.5e-14731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr +L YPrGA++V+CalC+t+
  Lj0g3v0087929.1  7 CNGCRSILLYPRGATNVCCALCNTI 31
                     ***********************97 PP

2zf-LSD149.47.3e-164670125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y+rGA sVRC++C+tV
  Lj0g3v0087929.1 46 CGGCRTLLMYTRGAASVRCSCCHTV 70
                     ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.5E-13434IPR005735Zinc finger, LSD1-type
PfamPF069435.6E-12731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.0E-174372IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-134670IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MQSQLVCNGC RSILLYPRGA TNVCCALCNT ITAVPPPGMD MSQLYCGGCR TLLMYTRGAA  60
SVRCSCCHTV NLAPANQVAH VPCGNCR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.21931e-142floral bud| flower| pod| root
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0087929.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1340281e-144BT134028.1 Lotus japonicus clone JCVI-FLLj-17O11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629307.17e-53protein LSD1
SwissprotQ0J7V95e-41LSD1_ORYSJ; Protein LSD1
TrEMBLI3S0N11e-55I3S0N1_LOTJA; Uncharacterized protein
STRINGAET044892e-52(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.14e-44lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]