PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0087929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LSD | ||||||||
Protein Properties | Length: 87aa MW: 9211.86 Da PI: 8.301 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44 | 3.5e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+t+ Lj0g3v0087929.1 7 CNGCRSILLYPRGATNVCCALCNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 49.4 | 7.3e-16 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA sVRC++C+tV Lj0g3v0087929.1 46 CGGCRTLLMYTRGAASVRCSCCHTV 70 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.5E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.6E-12 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.0E-17 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.2E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MQSQLVCNGC RSILLYPRGA TNVCCALCNT ITAVPPPGMD MSQLYCGGCR TLLMYTRGAA 60 SVRCSCCHTV NLAPANQVAH VPCGNCR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2193 | 1e-142 | floral bud| flower| pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0087929.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT134028 | 1e-144 | BT134028.1 Lotus japonicus clone JCVI-FLLj-17O11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024629307.1 | 7e-53 | protein LSD1 | ||||
Swissprot | Q0J7V9 | 5e-41 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | I3S0N1 | 1e-55 | I3S0N1_LOTJA; Uncharacterized protein | ||||
STRING | AET04489 | 2e-52 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 4e-44 | lsd one like 1 |
Publications ? help Back to Top | |||
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