PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0087799.3

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 452aa MW: 50274.1 Da PI: 5.7711

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0087799.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	9.2e-10	166	209	4	47
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+k Lj0g3v0087799.3 166 QKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQK 209 6889*************************988888887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.4E-8	157	210	No hit	No description
SMART	SM00338	1.5E-7	163	226	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	165	209	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-7	167	210	No hit	No description
CDD	cd14708	4.89E-21	167	218	No hit	No description
Pfam	PF00170	6.6E-7	167	209	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-32	250	324	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MWSRASVDAE FDSQQLPSSN AYFTEGSMID SFRVSDFDQS VGYRIEDAVD LSGNSAFNPV 60 KVSNQTISRV HIGTFDKLPI SLDKSPLTNQ TEQEGLQLQK IQSSNLVTLL SGNTENQEES 120 AMADASPRTD ISTDGDTDDK NQRFDRSSLA VGASDSSDRS KDKTDQKSLR RLAQNREAAR 180 KSRLRKKAYV QQLESSRLKL TQLEQELQKA RQQGIFISNS GDQAHSNSGN GAMAFDVEYA 240 RWLEEQNRLI NELRAAVNSH ASDTELRMIL DGIMAHYDEI FKMKIVAAKA DVFHLLSGMW 300 KTPAERCFLW LGGFRSSELL KLLVNQLEPL TEQQLVGITN LQQSSQQAED ALSQGMEALQ 360 QSLSETLSTG SPGSSGSSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQIHRIL 420 TTRQSARALL AINDYFSRLR ALSSLWLARP RD

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MWSRASVDAE FDSQQLPSSN AYFTEGSMID SFRVSDFDQS VGYRIEDAVD LSGNSAFNPV  60
KVSNQTISRV HIGTFDKLPI SLDKSPLTNQ TEQEGLQLQK IQSSNLVTLL SGNTENQEES  120
AMADASPRTD ISTDGDTDDK NQRFDRSSLA VGASDSSDRS KDKTDQKSLR RLAQNREAAR  180
KSRLRKKAYV QQLESSRLKL TQLEQELQKA RQQGIFISNS GDQAHSNSGN GAMAFDVEYA  240
RWLEEQNRLI NELRAAVNSH ASDTELRMIL DGIMAHYDEI FKMKIVAAKA DVFHLLSGMW  300
KTPAERCFLW LGGFRSSELL KLLVNQLEPL TEQQLVGITN LQQSSQQAED ALSQGMEALQ  360
QSLSETLSTG SPGSSGSSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQIHRIL  420
TTRQSARALL AINDYFSRLR ALSSLWLARP RD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.7083	0.0	cell culture\| floral bud\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0087799.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT148940	0.0	BT148940.1 Lotus japonicus clone JCVI-FLLj-21P19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027354194.1	0.0	transcription factor TGA2.2-like isoform X1
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	Q93XA1	0.0	Q93XA1_PHAVU; TGA-type basic leucine zipper protein TGA2.1
STRING	XP_007133721.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-150	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]