PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0085519.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 391aa    MW: 44564 Da    PI: 6.3537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0085519.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-16123169148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+ +v+q+G   W +I  ++  gR +kqc++rw+++l
  Lj0g3v0085519.1 123 KGQWTYEEDMKLISLVNQYGETKWGKIGDMLE-GRAGKQCRERWYNHL 169
                      799*****************************.*************97 PP
2Myb_DNA-binding48.22.6e-15175217145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g+W++eE++ lv  ++++G++ W+ Ia+ ++ gRt++ +k++w+
  Lj0g3v0085519.1 175 KGSWSEEEEKVLVATHAKMGNR-WADIANLIP-GRTENGVKNHWN 217
                      799*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.903118169IPR017930Myb domain
SuperFamilySSF466897.49E-29120216IPR009057Homeodomain-like
SMARTSM007174.1E-14122171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-25124177IPR009057Homeodomain-like
CDDcd001672.63E-13126169No hitNo description
PfamPF139211.7E-17126184No hitNo description
PROSITE profilePS5129423.515170224IPR017930Myb domain
SMARTSM007172.9E-13174222IPR001005SANT/Myb domain
CDDcd001671.31E-9177220No hitNo description
Gene3DG3DSA:1.10.10.601.6E-20178222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MKERKFPMDQ SAIDMFLWNQ HSSFSHQPLV ENNIARSNNV ASVFGEEFSN FPFSGGSTQG  60
LLWPNTQESC FVDEFLPKEE PLECTSINQN PMLCMTVMDV TPINGKGVGR RSTKKESSMP  120
LIKGQWTYEE DMKLISLVNQ YGETKWGKIG DMLEGRAGKQ CRERWYNHLR PDIKKGSWSE  180
EEEKVLVATH AKMGNRWADI ANLIPGRTEN GVKNHWNATK RRLNSNRKNK KAAQSSNGKP  240
HSSILEDYIR SKTLTCTNPT TSPMSSVSNR ALLLFEDLSS NSYDANLEFL DPSDSIDTEV  300
LFMQKMFKEN QNQESFFNVE ASNLNKMTST SHLAFCQTDG VHDVTQCGFV YPFQYPDNMH  360
LGDNNFLHRE TVTQPMNYLP SDLYGSPLFN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-421212222103C-Myb DNA-Binding Domain
1msf_C3e-421212222103C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0085519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368435.11e-113transcription factor MYB119-like
TrEMBLA0A151U0N92e-98A0A151U0N9_CAJCA; Transcription factor MYB98
STRINGGLYMA02G39070.11e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-58myb domain protein 119