PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0085139.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 148aa    MW: 17229.8 Da    PI: 10.386
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0085139.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.42.7e-1913104191
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      kfY++Y++  GF vrk++ ++   +g+i++r+ vCskeg r+++  + +++ r  +  tr++C a+++v+ e+ + kw+v+ +++ HnH lap
  Lj0g3v0085139.1  13 KFYERYGQCYGFGVRKDNVYRG-SQGSIVTRQQVCSKEGVRHRKYLErRDRVRVAKGITRVSCPARFRVRFERnSCKWKVIYFDKTHNHILAP 104
                      6*******************98.778899************99988734555668999************999899*************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1713104IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGMEFDSEED AIKFYERYGQ CYGFGVRKDN VYRGSQGSIV TRQQVCSKEG VRHRKYLERR  60
DRVRVAKGIT RVSCPARFRV RFERNSCKWK VIYFDKTHNH ILAPVDKVHL ISSYRHLNDS  120
DKAQINSLKL HGVRTCNIMG LMLGQKGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0085139.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0103520.0AP010352.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15P01, TM1974, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.11e-41protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A484MMQ91e-43A0A484MMQ9_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-23FAR1-related sequence 5