PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0083039.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TALE
Protein Properties Length: 305aa    MW: 35211.8 Da    PI: 6.9163
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0083039.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-092312662055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Lj0g3v0083039.1 231 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 266
                      5679*****************************885 PP
2ELK346.5e-12186207122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +Ll+KYsgyL+sLkqE+s
  Lj0g3v0083039.1 186 ELKTHLLKKYSGYLSSLKQELS 207
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-214387IPR005540KNOX1
PfamPF037904.5E-224486IPR005540KNOX1
SMARTSM012568.9E-3094145IPR005541KNOX2
PfamPF037911.4E-2499144IPR005541KNOX2
PfamPF037897.1E-9186207IPR005539ELK domain
PROSITE profilePS5121310.999186206IPR005539ELK domain
SMARTSM011881.4E-6186207IPR005539ELK domain
PROSITE profilePS5007112.989206269IPR001356Homeobox domain
SuperFamilySSF466891.07E-19207281IPR009057Homeodomain-like
SMARTSM003892.1E-13208273IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-27211272IPR009057Homeodomain-like
CDDcd000863.79E-12218270No hitNo description
PfamPF059208.1E-17226265IPR008422Homeobox KN domain
PROSITE patternPS000270244267IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKTEATTSQL LHTPIFHYPL MRGNLMHHSQ QGGSGSPSSS EVEAIKAKIL AHPQYSSLLE  60
AYMDCQKIGA PPEVVARLVA ARQEFEARRR SSVSSRENSK DPELDQFMEA YYDMLVKYRE  120
ELTRPIQEAM DFMRRIETQL NMLCNGPVRI FNDDKCEGVG SSEEDQDNSG GETELPEIDP  180
RAEDRELKTH LLKKYSGYLS SLKQELSKKK KKGKLPKDAR QKLLNWWELH YKWPYPSESE  240
KVALAESTGL DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQNATLYM DGHYMAADGH  300
YRLGP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0083039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7902470.0AY790247.1 Lotus corniculatus var. japonicus homeobox knotted-1-like protein KNOX2 (KN2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001253999.10.0homeobox protein knotted-1-like 2-like
RefseqXP_028198698.10.0homeotic protein knotted-1-like
SwissprotO041351e-169KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A371EDR30.0A0A371EDR3_MUCPR; Uncharacterized protein (Fragment)
STRINGGLYMA14G10430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-132KNOTTED-like from Arabidopsis thaliana