PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0082899.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 347aa    MW: 38879.4 Da    PI: 4.7098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0082899.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-072311848
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++G+++W++I++ +  ++++kqck rw+ +l
  Lj0g3v0082899.2  2 KYGKNQWARISSLLV-RKSAKQCKARWHEWL 31
                     89*************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.21135IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-9239IPR009057Homeodomain-like
CDDcd001671.07E-6231No hitNo description
SuperFamilySSF466891.94E-7245IPR009057Homeodomain-like
PfamPF002497.6E-6231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MKYGKNQWAR ISSLLVRKSA KQCKARWHEW LDPSIKKADR LIKEEARYLC IAMGHGSEPL  60
DEFIEAHNTC LNDLMYFPTR EAYGLSSVAG NMEKVTSLQH EFESVRNKLE DGKVKIARLE  120
KKVIVLTQGY EVRAKQSLGP QIEATFRQMD VAATEIECFI ALQKQEQLAA SHRINNLRDE  180
VQKQKELEKT LQKKYVSLIE ELEKKQAMME QYRALAQQQE EIEALSHAHE STETAANETD  240
TENCKDMPHS LEHGSVVADD PSHVGTANQQ VDIVQDQGTS SPKKDMDVDS DEVHEDVKLP  300
DATIAAENDN GKVEGTGTDG DAYNGENTLD MGAAVEISTS EGSEDKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dim_A2e-161392563Cell division cycle 5-like protein
5mqf_L2e-16120324796Cell division cycle 5-like protein
5xjc_L2e-16120324796Cell division cycle 5-like protein
5yzg_L2e-16120324796Cell division cycle 5-like protein
5z56_L2e-16120324796Cell division cycle 5-like protein
5z57_L2e-16120324796Cell division cycle 5-like protein
5z58_L2e-16120324796Cell division cycle 5-like protein
6ff4_L2e-16120324796Cell division cycle 5-like protein
6ff7_L2e-16120324796Cell division cycle 5-like protein
6icz_L2e-16120324796Cell division cycle 5-like protein
6id0_L2e-16120324796Cell division cycle 5-like protein
6id1_L2e-16120324796Cell division cycle 5-like protein
6qdv_O2e-16120324796Cell division cycle 5-like protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0082899.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368040.11e-139cell division cycle 5-like protein isoform X3
SwissprotP929483e-54CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A445INF51e-133A0A445INF5_GLYSO; Cell division cycle 5-like protein isoform B
TrEMBLI1LBQ21e-133I1LBQ2_SOYBN; Uncharacterized protein
STRINGGLYMA10G30870.11e-133(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-51cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]