PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0081269.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 317aa    MW: 35035.9 Da    PI: 6.504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0081269.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00165577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k+F+++  L  H  +H
  Lj0g3v0081269.1 55 FECKACKKVFNSHQALGGHRASH 77
                     89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-85477No hitNo description
PfamPF139128.2E-105579IPR007087Zinc finger, C2H2
SMARTSM003550.135577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0765582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-8139166No hitNo description
PfamPF139122.2E-13143167IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681144166IPR007087Zinc finger, C2H2
SMARTSM003550.51144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMLSNAIVDP LVAEPEESCA SASRDEERRN PMNFIAPLSY RVPDKAKGVA KSGLFECKAC  60
KKVFNSHQAL GGHRASHKKV KGCFAARLDN NLDDGFAGAE DDLFMQEELY LAKSNSTLQF  120
DHGTTNNNPT LLASSSSKKK SKVHECSICH RSFSSGQALG GHKRCHWITS NAPDTSTLAR  180
FQQFQEHLDQ VPKFDPSSEP IDLKLDLNLP APTTNDLARR NVSTEFYLQP WVATKDDNIN  240
SPCQSHHQHL NNQVDNEINN EDKNNNTCNN TNVDNNEADN KVKLAKLSEL KDINIGSSSS  300
PWLQVGIGST TDVRIDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0081269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208330.11e-153zinc finger protein ZAT9
TrEMBLA0A151QQ681e-152A0A151QQ68_CAJCA; Zinc finger protein 1
TrEMBLA0A371HVY91e-151A0A371HVY9_MUCPR; Zinc finger protein ZAT3 (Fragment)
STRINGXP_007134731.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF751188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.18e-23C2H2-like zinc finger protein